SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68709

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene68709
CGTCGTGACCTTGGCTGTCACTCAAGGTTTGAAGAAGGAGCAACCCAGTTCAGGGATGATGTTGCAGCTAATCCAAATGATACTGAGGAATCAATTTGGTGTTTCCTCTGTGAAGCTCAACTACATGGAGTTGATGAAGCTCGAAGGCGGTTTCTAGAGGTTGGTCCAGATCCAAGACCTGTCATGCACAAAGTGTATCTAATAGTTTAAAAATGGTGGTGATCC

Ace file of the UniGene sp_v3.0_unigene68709

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	TPR repeat	-	-	2.356e-09	-

Source	Gene names
Sma3	At3g05625; CHLREDRAFT_205921; MtrDRAFT_AC147963g33v2; OsI_01794; OsJ_01653; PHYPADRAFT_199147; POPTRDRAFT_570752; RCOM_1434130; TPR2; VITISV_004109;

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G05625.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:1632408-1633912 FORWARD LENGTH=257	3.0e-26	77%
RefSeq	Arabidopsis thaliana	NP_683531.2	tetratricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-26	77%
RefSeq	Populus trichocarpa	XP_002319500.1	predicted protein [Populus trichocarpa]	4.0e-29	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ23

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 76 aas, your sequence is shorter than subject: 70 - 275

Fln protein: RRDLGCHSRFEEGATQFRDDVAANPNDTEESIWCFLCEAQLHGVDEARRRFLEVGPDPRPVMHKVYLIV*

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTTTGAAGAAGGAGCAACCCAGTTCAGGGATGATGTTGCAGCTAATCCAAATGATACTGAGGAATCAATTTGGTGTTTCCTCTGTGAAGCTCAACTACATGGAGTTGATGAAGCTCGAAGGCGGTTTCTAGAGGTTGGTCCAGATCCAAGACCTGTCATGCACAAAGTGTATCTAATAGTTTAAAAATGGTGGTGATCC

Fln Alignment:

GG46A6U01BAP7H___SRFEEGATQFRDDVAANPNDTEESIWCFLCEAQLHGVDEARRRFLEVGPDPRPVMHKVYLI
A9NZ23_______________NRFEEGATQFRDDVAANPNDTEESIWCFLCEAQIDGVDEARRRFLEVGLDPRPVMRKAYLM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain