SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68706

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene68706
CGTCGTGACCTTGGCTGTCACTCATGTTTTTTGATTTTGATCAATGTTGCATTTTTTGGAACGGGCAATGTTGCAAGCATTGCAAGCTTTGAAATTTCATCAGTGTACCGGTTCATCACCGTTTTCAATCCATTCATTATGGCATCACTGCTTCTCTTCAAATTGTTTATTCCATTTATACTTGTCACGTGCGCATTCAATGCCATCACGAAACTTGTCAAGTTACCAAGATTGGGTTGTTATTTTATGGTGCTCTTATTCTCAGATGTCATGACCATCCATTTCTTTTTTCTTGTACGCAACACTGGCAGTTGGATGGAAATAGGTAACACCATCAGC

Ace file of the UniGene sp_v3.0_unigene68706

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative phosphatidylinositolglycan class N short form n=1 Tax=Arabidopsis thaliana RepID=Q9SGH9_ARATH	-	-	5.0e-38	72%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	80%
Sma3	ATP exporter family	-	-	1.318e-09	-

Source	Gene names
Sma3	At3g01380; GSVIVT00020799001; MICPUCDRAFT_16604; MICPUN_84585; OSTLU_37402; Os02g0581000; OsI_07815; OsJ_07276; Ot04g01340; PHYPADRAFT_128153; POPTRDRAFT_829721; RCOM_0852450; T13O15.2;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	GPI anchor biosynthetic process	GO:0006506	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPI ethanolamine phosphate transferase 1	IPR007070	-	-
Sma3	Alkaline phosphatase-like, alpha/beta/alpha	IPR017849	-	-
Sma3	GPI ethanolamine phosphate transferase 1, C-terminal	IPR017852	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01380.1	" transferases;sulfuric ester hydrolases;catalytics;transferases chr3:144288-149828 REVERSE LENGTH=993"	0.0	81%
RefSeq	Arabidopsis thaliana	NP_186787.4	sulfatase and phosphatidylinositolglycan class N domain-containing protein [Arabidopsis thaliana]	0.0	81%
RefSeq	Populus trichocarpa	XP_002300025.1	predicted protein [Populus trichocarpa]	1.4013e-45	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1J6G3

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 113 - 237

Fln protein: RRDLGCHSCFLILINVAFFGTGNVASIASFEISSVYRFITVFNPFIMASLLLFKLFIPFILVTCAFNAITKLVKLPRLGCYFMVLLFSDVMTIHFFFLVRNTGSWMEIGNTIS

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTTTTGATTTTGATCAATGTTGCATTTTTTGGAACGGGCAATGTTGCAAGCATTGCAAGCTTTGAAATTTCATCAGTGTACCGGTTCATCACCGTTTTCAATCCATTCATTATGGCATCACTGCTTCTCTTCAAATTGTTTATTCCATTTATACTTGTCACGTGCGCATTCAATGCCATCACGAAACTTGTCAAGTTACCAAGATTGGGTTGTTATTTTATGGTGCTCTTATTCTCAGATGTCATGACCATCCATTTCTTTTTTCTTGTACGCAACACTGGCAGTTGGATGGAAATAGGTAACACCATCAGC

Fln Alignment:

GG46A6U01CSK99___FLILINVAFFGTGNVASIASFEISSVYRFITVFNPFIMASXXXXXXXXXXXXVTCAFNAITKLVKLPRLGCYFMVLLFSDVMTIHFFFLVRNTGSWMEIGNTIS
I1J6G3_______________FMVLFNVAFFGTGNFASIASFEISSVYRFITIFSPFLMAALLIFKLFIPFLLVICVFSAITKLNQVPRLGCYFLVILFSDMMTIHFFFLVRNTGSWMEIGNSIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain