SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68697

Length: 176 nt

UniGene Fasta

>sp_v3.0_unigene68697
CGTCGTGACCTTGGCTGTCACTCAATTGGGTTTTTACACATTCTCGCCTAGGAATGCGGAAGCAAGAGTAACTGATTACTAAAATCTCATCAAGATGGAGTCATGTAACTGCATAGATCCGCCATGGTCAGCAGATGATCTGCTAACAAAATATCAATACATATCGGACTTCTTTA

Ace file of the UniGene sp_v3.0_unigene68697

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene receptor, putative n=1 Tax=Ricinus communis RepID=B9T4T3_RICCO	-	-	4.0e-07	85%
FL-Next	sp=Ethylene receptor 2; Pelargonium hortorum (Common geranium).	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Sma3	Histidine kinase.	EC:2.7.13.3	-	3.627e-06	-

Source	Gene names
Sma3	ETR1; ETR2; GSVIVT00000993001; RCOM_0333030; VITISV_002135;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	Signal transduction histidine kinase, hybrid-type, ethylene sensor	IPR014525	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9XH57

Fln msg: Distance to subject end: 714 aas, your sequence is shorter than subject: 27 - 741

Fln protein: MESCNCIDPPWSADDLLTKYQYISDFF

Protein Length: 28

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGGGTTTTTACACATTCTCGCCTAGGAATGCGGAAGCAAGAGTAACTGATTACTAAAATCTCATCAAG_-_ATGGAGTCATGTAACTGCATAGATCCGCCATGGTCAGCAGATGATCTGCTAACAAAATATCAATACATATCGGACTTCTTTA

Fln Alignment:

GG46A6U01DSJS1___MESCNCIDPPWSADDLLTKYQYISDFF
Q9XH57_______________MESCNCIEPQWPADELLMKYQYISDFF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain