SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68696

Length: 247 nt

UniGene Fasta

>sp_v3.0_unigene68696
CGTCGTGACCTTGGCTGTCACTCATCCTCTGTTTCGACTCGTGTTGGTAACGAGCTCGGTGCCTGTAAGCCTGCCAAGGCCAAGCTTGCTACCCTTGTAGCCCTTGGTTGTGCAGTAGTCATAGCCCTGATCAGTGTAACATGGACAACCGTCCTAAGAGACAAATGGGGAAAGCTTTTCACAAATGATGAGACTGTTTTACGCTTAACTGCTGCAGTTATGCCTATCATAGGTCTATGCGAATTAG

Ace file of the UniGene sp_v3.0_unigene68696

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative MATE efflux membrane protein [Oryza sativa Japonica Group] gb\|ABF99793.1\| MATE efflux family protein, expressed [Oryza sativa Japonica Group] dbj\|BAH01142.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	3.0e-18	57%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	69%
Sma3	Multidrug resistance pump, putative	-	-	1.195e-09	-

Source	Gene names
Sma3	At1g71870; At5g49130; F14O23.25; F17M19.2; GSVIVT00001728001; GSVIVT00015036001; GSVIVT00033026001; LOC_Os03g62270; OSJNBa0042I09.8; Os03g0839200; OsI_14245; OsJ_13298; PHYPADRAFT_13859; PHYPADRAFT_179266; PHYPADRAFT_215890; PHYPADRAFT_60121; POPTRDRAFT_2

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S8	IPR000630	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49130.1	MATE efflux family protein chr5:19915904-19917525 FORWARD LENGTH=502	2.0e-22	58%
RefSeq	Arabidopsis thaliana	NP_199724.1	mate efflux domain-containing protein [Arabidopsis thaliana]	2.0e-22	58%
RefSeq	Populus trichocarpa	XP_002326006.1	predicted protein, partial [Populus trichocarpa]	8.0e-26	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TFA1

Fln msg: Distance to subject end: 127 aas, your sequence is shorter than subject: 82 - 500

Fln protein: RRDLGCHSSSVSTRVGNELGACKPAKAKLATLVALGCAVVIALISVTWTTVLRDKWGKLFTNDETVLRLTAAVMPIIGLCEL

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTCTGTTTCGACTCGTGTTGGTAACGAGCTCGGTGCCTGTAAGCCTGCCAAGGCCAAGCTTGCTACCCTTGTAGCCCTTGGTTGTGCAGTAGTCATAGCCCTGATCAGTGTAACATGGACAACCGTCCTAAGAGACAAATGGGGAAAGCTTTTCACAAATGATGAGACTGTTTTACGCTTAACTGCTGCAGTTATGCCTATCATAGGTCTATGCGAATTAG

Fln Alignment:

GG46A6U01BIGZD___SSSVSTRVGNELGACKPAKAKLATLVALGCAVVIALISVTWTTVLRDKWGKLFTNDETVLRLTAAVMPIIGLCEL
A9TFA1_______________SSSVSTRVGKELGAGNPARARIATFVALSCALIVAVVSLTWTTVLRGIWGHVFTKDENVLALTAAVLPLIGLCEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain