SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68691

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene68691
CGTCGTGACCTTGGCTGTCACTCAGACGGACGCCAAATTTTTGATAGAATGTCGACTCGTGACGTGGTTTTATGGAGTGCAATGGTTGCCGGCTATGCTCAGAGTGGTTTTGGGGAAGAGGCCATTAAACTCTTTTTTGAAATGCAATCACGGGGTATGGATCTAGACAACCTCACTTATGCCAGCCTTCTTCGGGCTTGTGCCAGCCTAGCAGATGTGAAACTTGGAAATCAGGCTCATGCCCA

Ace file of the UniGene sp_v3.0_unigene68691

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q0WNP3.1\|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520 dbj\|BAF01256.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE84057.1\| pentatricopeptide rep	-	-	5.0e-13	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	POPTRDRAFT_554711;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18520.1	Pentatricopeptide repeat (PPR) superfamily protein chr4:10215250-10217103 REVERSE LENGTH=617	3.0e-17	48%
RefSeq	Arabidopsis thaliana	NP_193587.4	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-17	48%
RefSeq	Populus trichocarpa	XP_002307479.1	predicted protein [Populus trichocarpa]	2.0e-16	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 81 - 394

Fln protein: RRDLGCHSDGRQIFDRMSTRDVVLWSAMVAGYAQSGFGEEAIKLFFEMQSRGMDLDNLTYASLLRACASLADVKLGNQAHA

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACGGACGCCAAATTTTTGATAGAATGTCGACTCGTGACGTGGTTTTATGGAGTGCAATGGTTGCCGGCTATGCTCAGAGTGGTTTTGGGGAAGAGGCCATTAAACTCTTTTTTGAAATGCAATCACGGGGTATGGATCTAGACAACCTCACTTATGCCAGCCTTCTTCGGGCTTGTGCCAGCCTAGCAGATGTGAAACTTGGAAATCAGGCTCATGCCCA

Fln Alignment:

GG46A6U01C1NW9___GCHSDGRQIFDRMSTRDVVLWSAMVAGYAQSGFGEEAIKLFFEMQSRGMDLDNLTYASLLRACASLADVKLGNQAH
B8LKN6_______________GSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain