SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68659

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene68659
CGTCGTGACCTTGGCTGTCACTCATTTGCTGGGAGTCAAAGGAGCAAATGCACAATGCCCTGGTGCCAATTCTCAACGCTTGGCCAGAATTGTGGCAGGAGCAGTTTTGGCTGGAGAGCTGTCTCTAATGTCTGCTCTGGCTGCAGGCCAGCTTGTCAAGAGTCACATGATGTACAACAGATCAAACAAGGATGTGAAAGCAACCTCCTGAGACCTCATAGTCTATAGAACCCAATAAAGTCAGCA

Ace file of the UniGene sp_v3.0_unigene68659

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Taxus x media RepID=Q6WP38_9CONI	-	-	2.0e-20	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	3-hydroxy-3-methylglutaryl-coenzyme A reductase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase (NADPH).	EC:1.1.1.34	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Terpenoid backbone biosynthesis	00900	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AHM1; AHM4; AT1G76490; At1g76490; At2g17370; Cm-HMGR; F5J6.24; GSVIVT00002942001; GSVIVT00006002001; GSVIVT00036301001; GenHMG1; HMG1; HMG2; HMG3; HMGR; HMGR1; HMGR2; HMGR3; HMGRL; HMGr; HbHMGR; LOC_Os08g40180; Os08g0512700; Os09g0492700; OsI_008506; OsI_

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	plastid membrane	GO:0042170	Cellular Component	-
Sma3	hydroxymethylglutaryl-CoA reductase (NADPH) activity	GO:0004420	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	isoprenoid biosynthetic process	GO:0008299	Biological Process	-
Sma3	coenzyme A metabolic process	GO:0015936	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, eukaryotic/arcaheal type	IPR004554	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G17370.1	HMG2, HMGR2 3-hydroxy-3-methylglutaryl-CoA reductase 2 chr2:7550007-7551981 FORWARD LENGTH=562	4.0e-23	70%
RefSeq	Arabidopsis thaliana	NP_179329.1	3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 [Arabidopsis thaliana]	5.0e-23	70%
RefSeq	Populus trichocarpa	XP_002300544.1	predicted protein [Populus trichocarpa]	8.0e-22	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAJ6

Fln msg: your sequence is shorter than subject: 70 - 305

Fln protein: VVTLAVTHLLGVKGANAQCPGANSQRLARIVAGAVLAGELSLMSALAAGQLVKSHMMYNRSNKDVKATS*

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGCTGGGAGTCAAAGGAGCAAATGCACAATGCCCTGGTGCCAATTCTCAACGCTTGGCCAGAATTGTGGCAGGAGCAGTTTTGGCTGGAGAGCTGTCTCTAATGTCTGCTCTGGCTGCAGGCCAGCTTGTCAAGAGTCACATGATGTACAACAGATCAAACAAGGATGTGAAAGCAACCTCCTGA___GACCTCATAGTCTATAGAACCCAATAAAGTCAGCA

Fln Alignment:

GG46A6U01AXD5Z___AVTHLLGVKGANAQCPGANSQRLARIVAGAVLAGELSLMSALAAGQLVKSHMMYNRSNKDVKATS
D5AAJ6_______________ACLNLLGVKGANAQSPGANSQRLARIVAGAVLAGELSLMSALAAGQLVKSHMKYNRSNKDMKANS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain