SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68654

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene68654
GTTGTTTGTCATAACATATTTTACCAAGCAACTTAATTGGCTTCTAGTGATCTAATTTTGTGACCAATGAAACTCGTGCAGGAAACATTTGTGAAAATAAGAGAGCAAGCAAAAGCTTCCTTAGAAATGAGACATGAATTAATAAATGGGATTAATTTGATCAATAGTACTGATTTGGGATCTTTTCCGGATCGATACAAGGCTGAGATTCTC

Ace file of the UniGene sp_v3.0_unigene68654

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	73%

Source	Gene names
Sma3	GSVIVT00036786001; OsI_27084; OsJ_25347; PHYPADRAFT_183414; POPTRDRAFT_827059; RCOM_0870970;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	PIK-related kinase	IPR014009	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G17930.1	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain chr2:7784455-7802230 REVERSE LENGTH=3858	1.0e-12	71%
RefSeq	Arabidopsis thaliana	NP_179383.3	transformation/transcription domain-associated protein [Arabidopsis thaliana]	2.0e-12	71%
RefSeq	Populus trichocarpa	XP_002327756.1	predicted protein [Populus trichocarpa]	2.0e-12	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GWN0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 831 aas, your sequence is shorter than subject: 71 - 3903

Fln protein: VVCHNIFYQAT*LASSDLIL*PMKLVQETFVKIREQAKASLEMRHELINGINLINSTDLGSFPDRYKAEIL

Protein Length: 72

Fln nts: GTTGTTTGTCATAACATATTTTACCAAGCAACTTAATTGGCTTCTAGTGATCTAATTTTGTGACCAATGAAACTCGTGCAGGAAACATTTGTGAAAATAAGAGAGCAAGCAAAAGCTTCCTTAGAAATGAGACATGAATTAATAAATGGGATTAATTTGATCAATAGTACTGATTTGGGATCTTTTCCGGATCGATACAAGGCTGAGATTCTC

Fln Alignment:

GG46A6U01CK8NI___VQETFVKIREQAKASLEMRHELINGINLINSTDLGSFPDRYKAEI
F6GWN0_______________VQEAFVKIREQAKAYLEMKGELTNGLNLINSTNLEYFPVKHKAEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain