SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68640

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene68640
CGTCGTGACCTTGGCTGTCACTCATAGCATGCTAAGCGGTGATATTCCTCTTACCCTCCAAAATTGGACTAAATTAACATTTTTAGATCTGTCTTATAACATGCTAAGCGGTGATATTCCTCTAGCCTTCCAAAATTTGAATCAATTGACCTTTTTATATCTCGATGATAATAAGTTGACTGGTCCAATTCCTGAAACCATTATCCATCTAATAAAACTTGAATTACTCAGTCTCTCAGACAATT

Ace file of the UniGene sp_v3.0_unigene68640

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F15P11.4 protein n=1 Tax=Arabidopsis thaliana RepID=Q9S9U3_ARATH	-	-	3.0e-13	49%
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	46%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G27060.1	AtRLP53, RLP53 receptor like protein 53 chr5:9522534-9525407 REVERSE LENGTH=957	1.0e-17	49%
RefSeq	Arabidopsis thaliana	NP_198058.1	receptor like protein 53 [Arabidopsis thaliana]	2.0e-17	49%
RefSeq	Populus trichocarpa	XP_002333149.1	predicted protein [Populus trichocarpa]	2.0e-15	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: I4DUG2

Fln msg: Distance to subject end: 239 aas, your sequence is shorter than subject: 81 - 743

Fln protein: VVTLAVTHSMLSGDIPLTLQNWTKLTFLDLSYNMLSGDIPLAFQNLNQLTFLYLDDNKLTGPIPETIIHLIKLELLSLSDN

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAGCATGCTAAGCGGTGATATTCCTCTTACCCTCCAAAATTGGACTAAATTAACATTTTTAGATCTGTCTTATAACATGCTAAGCGGTGATATTCCTCTAGCCTTCCAAAATTTGAATCAATTGACCTTTTTATATCTCGATGATAATAAGTTGACTGGTCCAATTCCTGAAACCATTATCCATCTAATAAAACTTGAATTACTCAGTCTCTCAGACAATT

Fln Alignment:

GG46A6U01CN3CQ___LAVTHSMLSGDIPLTLQNWTKLTFLDLSYNMLSGDIPLAFQNLNQLTFLYLDDNKLTGPIPETIIHLIKLELLSLSDN
I4DUG2_______________LNLSHNMISGTIPQQIANLTNLTFLDLGNNLFSGNIPSVIKRFRLLERLHLNGNKLEGSIPSEIGRMEHLGLLDLSLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain