SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68614

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene68614
CGTCGTGACCTTGGCTGTCACTCACTTGTTGGTCATGGAGATGTCAAGGCTAGAAAGGATTCATGGTTTCTTAAGAAACTGGTTATAAACTACTTCTATGCTTTCATGAGGGCGAACTGCAGGGCAGGCCCTGCAAACCTCAGTGTGCCTCACACCAATCTCTTGCAGGTTAGCATGACATATACTGTCTGACTTGAAGGTTTCCATGAATCAGACATGCTGAA

Ace file of the UniGene sp_v3.0_unigene68614

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9SZS0_RICCO	-	-	4.0e-19	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Potassium transporter, putative	-	-	7.675e-07	-

Source	Gene names
Sma3	At1g60160; At4g33530; At5g09400; F17M5.1; GSVIVT00000271001; GSVIVT00028849001; HAK14; HAK7; KT5; KUP12; KUP5; KUP7; LOC_Os07g32530; OSJNBa0041C07.15-1; Os07g0509200; Os09g0376900; OsI_26150; OsI_31156; OsJ_24394; OsJ_29162; P0409B11.4; P0711A01.29-1; POP

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	K+ potassium transporter	IPR003855	-	0.0	-
Sma3		IPR018519	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G09400.1	KUP7 K+ uptake permease 7 chr5:2916377-2920604 FORWARD LENGTH=858	5.0e-23	66%
RefSeq	Arabidopsis thaliana	NP_568213.2	Potassium transporter 7 [Arabidopsis thaliana]	7.0e-23	66%
RefSeq	Populus trichocarpa	XP_002303189.1	predicted protein [Populus trichocarpa]	8.0e-25	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: your sequence is shorter than subject: 64 - 250

Fln protein: RRDLGCHSLVGHGDVKARKDSWFLKKLVINYFYAFMRANCRAGPANLSVPHTNLLQVSMTYTV*

Protein Length: 65

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTGTTGGTCATGGAGATGTCAAGGCTAGAAAGGATTCATGGTTTCTTAAGAAACTGGTTATAAACTACTTCTATGCTTTCATGAGGGCGAACTGCAGGGCAGGCCCTGCAAACCTCAGTGTGCCTCACACCAATCTCTTGCAGGTTAGCATGACATATACTGTCTGA___CTTGAAGGTTTCCATGAATCAGACATGCTGAA

Fln Alignment:

GG46A6U01BTI0P___RDLGCHSLVGHGDVKARKDSWFLKKLVINYFYAFMRANCRAGPANLSVPHTNLLQVSMTYTV
D5A8F8_______________REAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVYLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain