SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68578

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene68578
CGTCGTGACCTTGGCTGTCACTCAAATTGTTGCCGATCAGCTAATTAAAGAAGCAATTTTATCAAATTATGATTTTATCCATTTGCCTGGCGGCTGGTATGGAGCTCAAAAATTGGGATCATCAGAACAACTTGTAGCATTACTTAGAGAACATGCAGAGTCAAAGGTTTATGGAGCTATATGTGCATCAGCAGTAATGCTAGATACCAAAGGCTTGTTGAA

Ace file of the UniGene sp_v3.0_unigene68578

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana] gb\|AAF69547.1\|AC008007_22 F12M16.18 [Arabidopsis thaliana] gb\|AAL07117.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14123.1\| unknown protein [Arabidopsis thaliana] gb	-	-	6.0e-09	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	ThiJ/PfpI	IPR002818	-	0.0	-
Sma3	DJ-1	IPR006287	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G53280.1	Class I glutamine amidotransferase-like superfamily protein chr1:19864942-19867341 REVERSE LENGTH=438	8.0e-13	50%
RefSeq	Arabidopsis thaliana	NP_564626.1	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana]	1.0e-12	50%
RefSeq	Populus trichocarpa	XP_002313856.1	predicted protein [Populus trichocarpa]	3.0e-11	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1Y3

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 73 - 376

Fln protein: VVTLAVTQIVADQLIKEAILSNYDFIHLPGGWYGAQKLGSSEQLVALLREHAESKVYGAICASAVMLDTKGLL

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTGTTGCCGATCAGCTAATTAAAGAAGCAATTTTATCAAATTATGATTTTATCCATTTGCCTGGCGGCTGGTATGGAGCTCAAAAATTGGGATCATCAGAACAACTTGTAGCATTACTTAGAGAACATGCAGAGTCAAAGGTTTATGGAGCTATATGTGCATCAGCAGTAATGCTAGATACCAAAGGCTTGTTGAA

Fln Alignment:

GG46A6U01BC1DZ___VVTLAVTQIVADQLIKEAILSNYDFIHLPGGWYGAQKLGSSEQLVALLREHAES-KVYGAICASAVMLDTKGLL
A9P1Y3_______________IVAARGTKIVADRLFKDAILSNYDFIHLPGGWYGAQKLGSTEQLIDLLREHAESNKAYGVVCAAAVMLDTKGLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain