SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68541

Length: 198 nt

UniGene Fasta

>sp_v3.0_unigene68541
CGTCGTGACCTTGGCTGTCACTCATGGAAATTAGGGTAGTCAAGAAGGGAACGTTCGACGAATTGATGGATTACGCTATCAGTAGAGGGGCATCCATAAATCAATACAAAGCTCCCAGATGCGTTAAATTCACCCCCATTGTTGAGCTTCTCAACTCCAGGGTCATGCATTCTTACTTCAGTACGCAGCCGCCGCAAT

Ace file of the UniGene sp_v3.0_unigene68541

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin responsive GH3-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZF61_PICSI	-	-	8.0e-22	87%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	0.0	70%
Sma3	GH3 family protein	-	-	9.867e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	9.366e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		9.366e-18	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		9.366e-18	%

Source	Gene names
Sma3	At1g59500; At1g59500 orthologue; At2g14960; At2g23170; At4g27260; At5g54510; B1070A12.26; DFL1; F24B18.13; GH3; GH3-1; GH3-2; GH3-3; GH3-4; GH3-5; GH3-6; GH3-8; GH3.1; GH3.16; GH3.2; GH3.3; GH3.4; GH3.5; GH3.6; GH3.8; GSVIVT00007718001; GSVIVT00019610001;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	auxin homeostasis	GO:0010252	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GH3 auxin-responsive promoter	IPR004993	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G27260.1	GH3.5, WES1 Auxin-responsive GH3 family protein chr4:13653704-13655892 FORWARD LENGTH=612	8.0e-23	72%
RefSeq	Arabidopsis thaliana	NP_194456.1	indole-3-acetic acid-amido synthetase GH3.5 [Arabidopsis thaliana]	1.0e-22	72%
RefSeq	Populus trichocarpa	XP_002332226.1	GH3 family protein [Populus trichocarpa]	1.0e-22	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 65 - 615

Fln protein: S*PWLSLMEIRVVKKGTFDELMDYAISRGASINQYKAPRCVKFTPIVELLNSRVMHSYFSTQPPQ

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGAAATTAGGGTAGTCAAGAAGGGAACGTTCGACGAATTGATGGATTACGCTATCAGTAGAGGGGCATCCATAAATCAATACAAAGCTCCCAGATGCGTTAAATTCACCCCCATTGTTGAGCTTCTCAACTCCAGGGTCATGCATTCTTACTTCAGTACGCAGCCGCCGCAAT

Fln Alignment:

GG46A6U01CANBA___MEIRVVKKGTFDELMDYAISRGASINQYKAPRCVKFTPIVELLNSRVMHSYFSTQPPQ
Q4LAM0_______________LEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKFAPMVDILNSRVSASYFSPRCPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain