SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68526

Length: 165 nt

UniGene Fasta

>sp_v3.0_unigene68526
CGTCGTGACCTTGGCTGTCACTCAGCCTTAGCTACACAGAATCTGCATTATGCAAATGTTCTTCCTTCAATAGGTCTCAATGTTTACAGTATTTTACAACATGATACACTAGTGATGACAGTAGATGCAGTGAATCGAATTGTGGAGCGGATGCACACTCCAATT

Ace file of the UniGene sp_v3.0_unigene68526

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L4/L1 family protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQM8_ORYSJ	-	-	6.0e-17	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	50S ribosomal protein L4	-	-	3.818e-08	-

Source	Gene names
Sma3	At2g20060; LOC_Os11g37510; LOC_Os12g30490; Os11g0585700; Os12g0488600; OsI_36619; OsI_38360; OsJ_34399; OsJ_36122; PHYPADRAFT_191233; POPTRDRAFT_786295; RCOM_0903300; VITISV_027648;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L4/L1e	IPR002136	-	-
Sma3	Ribosomal protein L4/L1e, bacterial-type	IPR013005	-	-
Sma3		IPR015498	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20060.1	Ribosomal protein L4/L1 family chr2:8659384-8661227 FORWARD LENGTH=300	1.0e-20	82%
RefSeq	Arabidopsis thaliana	NP_565463.1	large subunit ribosomal protein L4 [Arabidopsis thaliana]	1.0e-20	82%
RefSeq	Populus trichocarpa	XP_002331557.1	predicted protein [Populus trichocarpa]	5.0e-22	89%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABZ3

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 55 - 323

Fln protein: RRDLGCHSALATQNLHYANVLPSIGLNVYSILQHDTLVMTVDAVNRIVERMHTPI

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCCTTAGCTACACAGAATCTGCATTATGCAAATGTTCTTCCTTCAATAGGTCTCAATGTTTACAGTATTTTACAACATGATACACTAGTGATGACAGTAGATGCAGTGAATCGAATTGTGGAGCGGATGCACACTCCAATT

Fln Alignment:

GG46A6U01DVBFE___LATQNLHYANVLPSIGLNVYSILQHDTLVMTVDAVNRIVERMHTPI
D5ABZ3_______________LATQNLHYANVLPSIGLNVYSILQHDTLVMTADAVNRIVERMHTPI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain