SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68510

Length: 250 nt

UniGene Fasta

>sp_v3.0_unigene68510
CGTCGTGACCTTGGCTGTCACTCATTACAACATGAATTTCACTGAACGTTACAATGAAATGCTTCGTAATTACAACAAAGTCATGTATTTAGCAGAGTTGTACGAGCCTTACGCCTTCTTTCAGGGAAGGTTCGACATAACAAACACCGAAGGCTTGCTGAGCAAGATTTCGGAGGATGACAGGATGGCGTTCAACTTCGATGTCAAATGCATTGATTGGCCCCATTACTACTCGAAGATTCATATCCCT

Ace file of the UniGene sp_v3.0_unigene68510

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Male sterility protein, putative n=1 Tax=Ricinus communis RepID=B9T853_RICCO	-	-	3.0e-12	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Male sterility	IPR004262	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G56700.1	FAR6 fatty acid reductase 6 chr3:20999731-21002058 REVERSE LENGTH=527	6.0e-16	48%
RefSeq	Arabidopsis thaliana	NP_191229.1	fatty acyl-CoA reductase 6 [Arabidopsis thaliana]	7.0e-16	48%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRT2

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 83 - 510

Fln protein: VVTLAVTHYNMNFTERYNEMLRNYNKVMYLAELYEPYAFFQGRFDITNTEGLLSKISEDDRMAFNFDVKCIDWPHYYSKIHIP

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTACAACATGAATTTCACTGAACGTTACAATGAAATGCTTCGTAATTACAACAAAGTCATGTATTTAGCAGAGTTGTACGAGCCTTACGCCTTCTTTCAGGGAAGGTTCGACATAACAAACACCGAAGGCTTGCTGAGCAAGATTTCGGAGGATGACAGGATGGCGTTCAACTTCGATGTCAAATGCATTGATTGGCCCCATTACTACTCGAAGATTCATATCCCT

Fln Alignment:

GG46A6U01DZM9C___VVTLAVTHYNMNFTERYNEMLRNYNKVMYLAELYEPYAFFQGRFDITNTEGLLSKISEDDRMAFNFDVKCIDWPHYYSKIHIP
B8LRT2_______________VVNEVISIFTARFTARYNQMLRNYNFMMYLAELYEPYVLFQGSFDITNTERLLEKVSVQDLEAFNFDVKCIDWVEYLSNVHIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain