SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68457

Length: 141 nt

UniGene Fasta

>sp_v3.0_unigene68457
CGTCGTGACCTTGGCTGTCACTCACCACACAGCGCAGCGTTTTCTTCTTGGCTCTGTATTTGATATCCATTGGCACAGGCGGCCACAAGCCCTCTCTGCAATCCTTCGGCGCAGACCAGTTTGACGAGGAAGATAAAACTG

Ace file of the UniGene sp_v3.0_unigene68457

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative peptide/nitrate transporter [Arabidopsis thaliana] sp\|P0CI03.1\|PTR28_ARATH RecName: Full=Putative peptide/nitrate transporter At2g37900 gb\|AEC09463.1\| putative peptide/nitrate transporter [Arabidopsis thaliana]	-	-	5.0e-08	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	At2g37900; F5K20_260; GSVIVT00021406001; PHYPADRAFT_134814; POPTRDRAFT_819189; POPTRDRAFT_832569; POPTRDRAFT_835537; RCOM_2046980; VITISV_024373;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G37900.1	Major facilitator superfamily protein chr2:15864396-15866408 REVERSE LENGTH=575	5.0e-12	83%
RefSeq	Arabidopsis thaliana	NP_181326.1	putative peptide/nitrate transporter [Arabidopsis thaliana]	6.0e-12	83%
RefSeq	Populus trichocarpa	XP_002309091.1	predicted protein [Populus trichocarpa]	9.0e-13	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 404 aas, your sequence is shorter than subject: 46 - 604

Fln protein: S*PWLSLTTQRSVFFLALYLISIGTGGHKPSLQSFGADQFDEEDKT

Protein Length: 47

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCACACAGCGCAGCGTTTTCTTCTTGGCTCTGTATTTGATATCCATTGGCACAGGCGGCCACAAGCCCTCTCTGCAATCCTTCGGCGCAGACCAGTTTGACGAGGAAGATAAAACTG

Fln Alignment:

GG46A6U01CTFWG___TQRSVFFLALYLISIGTGGHKPSLQSFGADQFDEED
A9NWU3_______________SQVGFFFFSLYLVALGQGGHKPCLQAFGADQFDERD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain