SustainPineDB

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Assembly info
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SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68436

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene68436
CGTCGTGACCTTGGCTGTCACTCAATGGTGGGAGCTTATGGTTTAGTATCTGCCTTCGATGTCCTCACCAAGTGGAATATATTGGATCAGAAATTGAGCCGGAAGTTTGTGCACATCTTATCAGGAATATTATTCATGATGTCCTGGCCTCTTTTCAGTGCTTCTGAAGATGCCCGTTATATTGGCTGCAATTGTGCCTCTAGCAAATTTTTTAAGGCTTCTGA

Ace file of the UniGene sp_v3.0_unigene68436

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phytol kinase 1, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9T3V4_RICCO	-	-	5.0e-12	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Sma3	Probable phytol kinase, chloroplastic	-	-	2.032e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.-.-	-	5.147e-19	-

Source	Gene names
Sma3	At5g04490; GSVIVT00018069001; H0624F09.4; LOC_Os04g57500; OSJNBa0043A12.34; Os04g0670700; OsI_17864; OsJ_16572; RCOM_0114890; T32M21_90; VTE5;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	phytol kinase activity	GO:0010276	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	-
Sma3	vitamin E biosynthetic process	GO:0010189	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidate cytidylyltransferase	IPR000374	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G04490.1	VTE5 vitamin E pathway gene 5 chr5:1279867-1281587 FORWARD LENGTH=304	4.0e-16	62%
RefSeq	Arabidopsis thaliana	NP_196069.1	phytol kinase 1 [Arabidopsis thaliana]	5.0e-16	62%
RefSeq	Populus trichocarpa	XP_002315347.1	predicted protein [Populus trichocarpa]	2.0e-15	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9Z1

Fln msg: Distance to subject end: 157 aas, your sequence is shorter than subject: 74 - 375

Fln protein: RRDLGCHSMVGAYGLVSAFDVLTKWNILDQKLSRKFVHILSGILFMMSWPLFSASEDARYIGCNCASSKFFKAS

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGTGGGAGCTTATGGTTTAGTATCTGCCTTCGATGTCCTCACCAAGTGGAATATATTGGATCAGAAATTGAGCCGGAAGTTTGTGCACATCTTATCAGGAATATTATTCATGATGTCCTGGCCTCTTTTCAGTGCTTCTGAAGATGCCCGTTATATTGGCTGCAATTGTGCCTCTAGCAAATTTTTTAAGGCTTCTGA

Fln Alignment:

GG46A6U01ATF1G___FDVLTKWNILDQKLSRKFVHILSGILFMMSWPLFSASEDARYIGCNCASSKFFK
D5A9Z1_______________WDEMAKRDVFDQKLNRKFVHISIGLIFMLFWPVFSTGPQAPYLAALAPGLNIFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain