SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68434

Length: 314 nt

UniGene Fasta

>sp_v3.0_unigene68434
CGTCGTGACCTTGGCTGTCACTCAGTTTTTTTTGTCCGCAGCATGAGTAATTACTCATGCCCTGGGAACTCCCTCGATGATGTGCATTTTATAGCATTATTTTTGAATGTGAAGTATTCAGCTAGATTTCGATGAAAATTATTGTTCTTTACTGGGTATAATTCTGCTCGTTTTCTTGTCGTGGAAATTTCTCTGAAACAATGTATTATTTTCACAGCTTGATCTGGGAAACTCTAACAGGAAGGGAACATCTATTGTTTTATGGTAGGCTGAAGAACCTAAAAGGTGTCTCTCTTCAAAATGCAGTACAAGAA

Ace file of the UniGene sp_v3.0_unigene68434

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter A family member 3 n=2 Tax=Arabidopsis thaliana RepID=AB3A_ARATH	-	-	6.0e-09	82%
FL-Next	sp=ABC transporter A family member 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	82%
Sma3	ABC transporter family, cholesterol/phospholipid flippase	-	-	3.464e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polyamine-transporting ATPase.	EC:3.6.3.31	-	3.232e-07	-

Source	Gene names
Sma3	ATH14; ATH16; ATH2; ATH3; ATH4; ATH5; ATH6; ATH7; At3g47740; At3g47750; At3g47760; At3g47770; At3g47780; At3g47790; At5g61700; At5g61740; GSVIVT00000115001; K11J9.23; MAC9.1; MAC9.5; OJ1051_A08.2; OJ1051_A08.3; OJ1198_B10.14; OJ1198_B10.15; Os08g0398300;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47740.1	ATATH2, ATH2, ABCA3 ABC2 homolog 2 chr3:17600651-17604965 FORWARD LENGTH=932	2.0e-12	82%
RefSeq	Arabidopsis thaliana	NP_190358.3	ABC transporter A family member 3 [Arabidopsis thaliana]	2.0e-12	82%
RefSeq	Populus trichocarpa	XP_002330092.1	ABC transporter family, cholesterol/phospholipid flippase, partial [Populus trichocarpa]	1.0e-11	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q1PEH6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 203 aas, your sequence is shorter than subject: 104 - 932

Fln protein: S*PWLSLSFFCPQHE*LLMPWELPR*CAFYSIIFECEVFS*ISMKIIVLYWV*FCSFSCRGNFSETMYYFHSLIWETLTGREHLLFYGRLKNLKGVSLQNAVQE

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTTTTGTCCGCAGCATGAGTAATTACTCATGCCCTGGGAACTCCCTCGATGATGTGCATTTTATAGCATTATTTTTGAATGTGAAGTATTCAGCTAGATTTCGATGAAAATTATTGTTCTTTACTGGGTATAATTCTGCTCGTTTTCTTGTCGTGGAAATTTCTCTGAAACAATGTATTATTTTCACAGCTTGATCTGGGAAACTCTAACAGGAAGGGAACATCTATTGTTTTATGGTAGGCTGAAGAACCTAAAAGGTGTCTCTCTTCAAAATGCAGTACAAGAA

Fln Alignment:

GG46A6U01AG6XT___HSLIWETLTGREHLLFYGRLKNLKGVSLQNAVQE
Q1PEH6_______________HDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain