SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68407

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene68407
CGTCGTGACCTTGGCTGTCACTCAGAGTTTGGAGGACGCACGCCATGTGTTTGACAAAATGTATGAGAGAAATGCGGTCTCGTGGAGTAGCGTGATCGGAGGATATGTGACACAGGGACAGTATGAGGAAGCCCTTGCATTGTTTTATAAGATGAGAGAAGACAGAGGAATAAAGGCAGACAATTTTGATTTCCTCCAGTTCTGAAAGCATGTGGAGCCCTTTCT

Ace file of the UniGene sp_v3.0_unigene68407

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SB36.1\|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g25270, chloroplastic; Flags: Precursor emb\|CAA23068.1\| putative protein [Arabidopsis thaliana] emb\|CAB	-	-	8.0e-08	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002322250.1	predicted protein [Populus trichocarpa]	2.0e-12	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 165 aas, your sequence is shorter than subject: 68 - 394

Fln protein: VVTLAVTQSLEDARHVFDKMYERNAVSWSSVIGGYVTQGQYEEALALFYKMREDRGIKADNFDFLQF*

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGTTTGGAGGACGCACGCCATGTGTTTGACAAAATGTATGAGAGAAATGCGGTCTCGTGGAGTAGCGTGATCGGAGGATATGTGACACAGGGACAGTATGAGGAAGCCCTTGCATTGTTTTATAAGATGAGAGAAGACAGAGGAATAAAGGCAGACAATTTTGATTTCCTCCAGTTCTGAAAGCATGTGGAGCCCTTTCT

Fln Alignment:

GG46A6U01A3QOQ___SLEDARHVFDKMYERNAVSWSSVIGGYVTQGQYEEALALFYKMR
B8LKN6_______________SIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain