SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68399

Length: 307 nt

UniGene Fasta

>sp_v3.0_unigene68399
CGTCGTGACCTTGGCTGTCACTCAAAGTTCCTGGTCATGGCAATGTTCACTTCGACTGCAACTCTTGGGTTTATCCCGCCTCTAAATACAACAGAGACCGTGTCTTTTTCTGTAATCGGAGCTATCTCCCCGCGAATACTCCTCATTCACTCAAAGAATTAGCGTCTGAATGGAAGAGACATTTGCTACTTTAAATTGGAGATCAGGGAAAGTCAGATTGGTACTTTGGAGGTGCTAATGTGCTTCAAGGATTTGGAGTCACCAAAACCTCCAAGCTTTTATTTGGAACATATCTGATTCTTGGCGA

Ace file of the UniGene sp_v3.0_unigene68399

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipoxygenase n=3 Tax=Cucumis RepID=C8CBS6_CUCME	-	-	1.0e-12	58%
FL-Next	sp=Lipoxygenase; Taxus wallichiana var. chinensis (Chinese yew) (Taxus chinensis).	-	-	0.0	57%
Sma3	Lipoxygenase	-	-	2.04e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	5.714e-17	-

Source	KEGGs	Term	e value	Identity
Sma3	Linoleic acid metabolism	00591	5.714e-17	%
Sma3	alpha-Linolenic acid metabolism	00592	5.714e-17	%
Sma3	Biosynthesis of plant hormones	01070	5.714e-17	%
Sma3	Metabolic pathways	01100	5.714e-17	%

Source	Gene names
Sma3	Lox1a; Lox1b; Lox1c; RCOM_0677750; lox9;

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G55020.1	LOX1, ATLOX1 lipoxygenase 1 chr1:20525798-20530143 FORWARD LENGTH=859	2.0e-14	58%
RefSeq	Arabidopsis thaliana	NP_175900.1	lipoxygenase 1 [Arabidopsis thaliana]	3.0e-14	58%
RefSeq	Populus trichocarpa	XP_002319015.1	predicted protein [Populus trichocarpa]	7.0e-15	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: G9L7U0

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 640 aas, your sequence is shorter than subject: 64 - 855

Fln protein: S*PWLSLKVPGHGNVHFDCNSWVYPASKYNRDRVFFCNRSYLPANTPHSLKELASEWKRHLLL*

Protein Length: 65

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTCCTGGTCATGGCAATGTTCACTTCGACTGCAACTCTTGGGTTTATCCCGCCTCTAAATACAACAGAGACCGTGTCTTTTTCTGTAATCGGAGCTATCTCCCCGCGAATACTCCTCATTCACTCAAAGAATTAGCGTCTGAATGGAAGAGACATTTGCTACTTTAAATTGGAGATCAGGGAAAGTCAGATTGGTACTTTGGAGGTGCTAATGTGCTTCAAGGATTTGGAGTCACCAAAACCTCCAAGCTTTTATTTGGAACATATCTGATTCTTGGCGA

Fln Alignment:

GG46A6U01DK1RK___LSLKVPG--HGNVHFDCNSWVYPASKYNRDRVFFCNRSYLPANTPHSLKELASE
G9L7U0_______________LTLHLPGAAQDTVHFVCDSWVYPASRYNTDRIFFSNRNYLPHETPPALVKLRNE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain