SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68365

Length: 169 nt

UniGene Fasta

>sp_v3.0_unigene68365
CGTCGTGACCTTGGCTGTCACTCAACATTCGGAGTGTCTGCACTGAGGCTGGGCATGTATGCTATTTCGAGCACGTAGTAAAGACTGTTACCGAGAAAGACTTTCTTGAAGCTGTGAATAAAGTCATTAAAGGATATCAAAAGTTTTAGTGCGACACCCAAATACATGG

Ace file of the UniGene sp_v3.0_unigene68365

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome regulatory subunit n=2 Tax=Chlamydomonadales RepID=A8IV67_CHLRE	-	-	7.0e-07	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%

Source	Gene names
Sma3	At1g53750; CHLREDRAFT_184001; F22G10.2; GSVIVT00033984001; Os02g0784700; Os06g0192600; OsI_09197; OsI_21990; OsJ_08636; OsJ_20424; PHYPADRAFT_162963; PHYPADRAFT_218038; POPTRDRAFT_739967; POPTRDRAFT_819430; POPTRDRAFT_940699; RCOM_0708270; RCOM_0995200; R

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002334015.1	predicted protein, partial [Populus trichocarpa]	5.0e-11	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRI8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 49 - 425

Fln protein: S*PWLSLNIRSVCTEAGHVCYFEHVVKTVTEKDFLEAVNKVIKGYQKF*

Protein Length: 50

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATTCGGAGTGTCTGCACTGAGGCTGGGCATGTATGCTATTTCGAGCACGTAGTAAAGACTGTTACCGAGAAAGACTTTCTTGAAGCTGTGAATAAAGTCATTAAAGGATATCAAAAGTTTTAG___TGCGACACCCAAATACATGG

Fln Alignment:

GG46A6U01EBF55___NIRSVCTEAGHVCYFEHVVKTVTEKDFLEAVNKVIKGYQKF
B8LRI8_______________DIRSVCTEAGMYAIRARR-KTVTEKDFLEAVNKVIKGYQKF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain