SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68328

Length: 270 nt

UniGene Fasta

>sp_v3.0_unigene68328
CGTCGTGACCTTGGCTGTCACTCAGCTCCTGGCTTTGTTCCTACACGTTTTGCTGGTTTCCTCACAACTAATGAAACCATTAGAAATGAACTTATCGAGAGGAGCATACTTAAGAGATTGGGTAGTGTGGAAGACATGGCTTCAGCCGCCGCTTTCCTGGCATCCGACGATGCATCCTTCATTACAGCTGAAACAATTGTTGTTGCTGGAGGAACACAATCAAGACTATAGATACGTTTTGAGGGTCAATCAGCTACAGTGTCATGATCA

Ace file of the UniGene sp_v3.0_unigene68328

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dehydrogenase/reductase SDR family member 4 [Arabidopsis thaliana] gb\|AAD48959.1\|AF147263_1 contains similarity to Pfam families PF00106 (short chain dehydrogenase; score=151.7, E=1.3e-41, N=1) and PF00678 (Short chain dehydrogenase/reductase C-terminus;	-	-	2.0e-08	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Dehydrogenase/reductase SDR family member 2	-	-	3.392e-09	-

Source	Gene names
Sma3	AT4g05530; At4g05530; GSVIVT00011718001; GSVIVT00015841001; OSJNBa0095O23.44; Os09g0133200; OsI_30467; OsJ_28455; P0406E03.18; PHYPADRAFT_206369; POPTRDRAFT_584743; POPTRDRAFT_727523; POPTRDRAFT_822754; RCOM_0902850; T1J24.9;

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	indolebutyric acid metabolic process	GO:0080024	Biological Process	-
Sma3	response to indolebutyric acid stimulus	GO:0080026	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G05530.1	IBR1, SDRA indole-3-butyric acid response 1 chr4:2816462-2818074 FORWARD LENGTH=254	2.0e-12	61%
RefSeq	Arabidopsis thaliana	NP_567300.1	dehydrogenase/reductase SDR family member 4 [Arabidopsis thaliana]	2.0e-12	61%
RefSeq	Populus trichocarpa	XP_002316593.1	predicted protein [Populus trichocarpa]	5.0e-15	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNV2

Fln msg: your sequence is shorter than subject: 77 - 253

Fln protein: RRDLGCHSAPGFVPTRFAGFLTTNETIRNELIERSILKRLGSVEDMASAAAFLASDDASFITAETIVVAGGTQSRL*

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTCCTGGCTTTGTTCCTACACGTTTTGCTGGTTTCCTCACAACTAATGAAACCATTAGAAATGAACTTATCGAGAGGAGCATACTTAAGAGATTGGGTAGTGTGGAAGACATGGCTTCAGCCGCCGCTTTCCTGGCATCCGACGATGCATCCTTCATTACAGCTGAAACAATTGTTGTTGCTGGAGGAACACAATCAAGACTATAG___ATACGTTTTGAGGGTCAATCAGCTACAGTGTCATGATCA

Fln Alignment:

GG46A6U01CELJE___APGFVPTRFAGFLTTNETIRNELIERSILKRLGSVEDMXXXXXXXXXXXXXXITAETIVVAGGTQSRL
A9NNV2_______________APGFVPTHFADFLVRNEDVKNSIEERTLLGRLGKTTDMASAVAFLASSDASYITGETLVVAGGLPSRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain