SustainPineDB

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Assembly info
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SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68073

Length: 192 nt

UniGene Fasta

>sp_v3.0_unigene68073
CGTCGTGACCTTGGCTGTCACTCATCGTTTCATTCCTCCTCCAGAACATTGCAATGGCATCAGAGGATGGGGGGTTCCAGATGCAATTGTGACGGGGAAGGGATGGTGGAATGTTGAGAACATAATGCAATGCCAGATGGTCAGTGATTTTCTTATTGCCTTAGCTTACTTTTCCATTCCTCTTGAGCTTCT

Ace file of the UniGene sp_v3.0_unigene68073

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ethylene receptor n=1 Tax=Nicotiana tabacum RepID=Q9SDY2_TOBAC	-	-	8.0e-07	70%
FL-Next	sp=Ethylene receptor 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%

Source	Gene names
Sma3	ETR2; OSJNBb0089K06.20; Os04g0169100; OsETRL1; OsI_14827; OsJ_31703; P0650D04.3;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	Signal transduction histidine kinase, hybrid-type, ethylene sensor	IPR014525	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q0WPQ2

Fln msg: Distance to subject end: 703 aas, atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning, your sequence is shorter than subject: 63 - 773

Fln protein: VVTLAVTHRFIPPPEHCNGIRGWGVPDAIVTGKGWWNVENIMQCQMVSDFLIALAYFSIPLEL

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTTTCATTCCTCCTCCAGAACATTGCAATGGCATCAGAGGATGGGGGGTTCCAGATGCAATTGTGACGGGGAAGGGATGGTGGAATGTTGAGAACATAATGCAATGCCAGATGGTCAGTGATTTTCTTATTGCCTTAGCTTACTTTTCCATTCCTCTTGAGCTTCT

Fln Alignment:

GG46A6U01C5YPX___IRGWGVP--DAIVTGKGWWNVENIMQCQMVSDFLIALAYFSIPLEL
Q0WPQ2_______________INGGGYPRCNCEDEGNSFWSTENILETQRVSDFLIAVAYFSIPIEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain