SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68063

Length: 328 nt

UniGene Fasta

>sp_v3.0_unigene68063
CGTCGTGACCTTGGCTGTCACTCAATATTAATGTAGAGCTAGGAGAGTATGGGGCAGAGCGTCTTATTGAGTTGGACCCTGATAATGCTTCACCATATGTGCTTCTATCAAACATCTATGCTGCAGCTGGGAAGTTGGATGGCTTAAAGAAGATGCGAAAACTGATGAAAAACAGGAAGTTAGAGAAGCAGCCTGGATGCAGTTGGATAAATGTTGATGAAAATGTGTATACGTTCCATGTAGAAGCTGGGTGAATCCCATAATTGCATAAAATTTGTTGAGACTTAGAAAGGGACCTGGTCTATGAGCTTGACACGGGATTTGTGCA

Ace file of the UniGene sp_v3.0_unigene68063

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Lepidogyna hodgsoniae RepID=B3U1P3_9MARC	-	-	3.0e-13	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Gene names
Sma3	GSVIVT00034388001;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G13600.1	Pentatricopeptide repeat (PPR) superfamily protein chr2:5671493-5673586 FORWARD LENGTH=697	3.0e-13	47%
RefSeq	Arabidopsis thaliana	NP_178983.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-13	47%
RefSeq	Populus trichocarpa	XP_002310520.1	predicted protein [Populus trichocarpa]	7.0e-13	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 89 aas, your sequence is shorter than subject: 84 - 246

Fln protein: S*PWLSLNINVELGEYGAERLIELDPDNASPYVLLSNIYAAAGKLDGLKKMRKLMKNRKLEKQPGCSWINVDENVYTFHVEAG*

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTAATGTAGAGCTAGGAGAGTATGGGGCAGAGCGTCTTATTGAGTTGGACCCTGATAATGCTTCACCATATGTGCTTCTATCAAACATCTATGCTGCAGCTGGGAAGTTGGATGGCTTAAAGAAGATGCGAAAACTGATGAAAAACAGGAAGTTAGAGAAGCAGCCTGGATGCAGTTGGATAAATGTTGATGAAAATGTGTATACGTTCCATGTAGAAGCTGGGTGAATCCCATAATTGCATAAAATTTGTTGAGACTTAGAAAGGGACCTGGTCTATGAGCTTGACACGGGATTTGTGCA

Fln Alignment:

GG46A6U01B7ZUQ___NVELGEYGAERLIELDPDNASPYVLLSNIYAAAGKLDGXXXXXXXXXXXXXXXQPGCSWINVDENVYTFHVE
D5AAE0_______________NIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain