SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68036

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene68036
TGTTGCAGAAGAATCATGCAGTTTAATTTCTGGGACTTGTAAAAATATATTTCTTCTAAGCATTCTCACTCATCGCAGTCCCCAATTTTTGTATTTTATTACTGTGGATTACGTGCCATGATTGTAGACCTGTTTATATGAGGACACGGAATTCTGGACATTTGTTTTTCTTCCTTTCTAACTGATGAGTGAAGTATATGTTCTTGAGTTTTTGATGGAAAGCTTGGCAACTGATTGAGCTGATGGTTTCTACTTTTCAGCCTGATCGAGTGATGGAGTTTTGCAACCATAATGATCTACAGCTCATTGTACGAGCACATGAATGTGTAATGGATGGCT

Ace file of the UniGene sp_v3.0_unigene68036

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=5 Tax=Magnoliophyta RepID=D7T1Q5_VITVI	-	-	2.0e-08	93%
FL-Next	sp=Serine/threonine-protein phosphatase BSL3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	93%
Sma3	Serine/threonine protein phosphatase	-	-	5.011e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	4.003e-21	-

Source	Gene names
Sma3	AT1G08420; At1g08420; At2g27210; At4g03080; BSL1; BSL2; BSL3; CHLREDRAFT_101543; GSVIVT00002635001; GSVIVT00007485001; LOC_Os03g44500; LOC_Os05g05240; LOC_Os12g42310; OJ1607_F09.10; Os03g0646900; Os05g0144400; Os12g0617900; OsI_12812; OsI_39138; OsJ_11899

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Serine/threonine protein phosphatase, BSU1	IPR012391	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27210.1	BSL3 BRI1 suppressor 1 (BSU1)-like 3 chr2:11630188-11636182 FORWARD LENGTH=1006	1.0e-11	93%
RefSeq	Arabidopsis thaliana	NP_001189614.1	serine/threonine-protein phosphatase BSL3 [Arabidopsis thaliana]	1.0e-11	93%
RefSeq	Populus trichocarpa	XP_002313501.1	predicted protein, partial [Populus trichocarpa]	1.0e-11	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SHS7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 93 aas, your sequence is shorter than subject: 112 - 1006

Fln protein: LQKNHAV*FLGLVKIYFF*AFSLIAVPNFCILLLWITCHDCRPVYMRTRNSGHLFFFLSN**VKYMFLSF*WKAWQLIELMVSTFQPDRVMEFCNHNDLQLIVRAHECVMDG

Protein Length: 113

Fln nts: TGTTGCAGAAGAATCATGCAGTTTAATTTCTGGGACTTGTAAAAATATATTTCTTCTAAGCATTCTCACTCATCGCAGTCCCCAATTTTTGTATTTTATTACTGTGGATTACGTGCCATGATTGTAGACCTGTTTATATGAGGACACGGAATTCTGGACATTTGTTTTTCTTCCTTTCTAACTGATGAGTGAAGTATATGTTCTTGAGTTTTTGATGGAAAGCTTGGCAACTGATTGAGCTGATGGTTTCTACTTTTCAGCCTGATCGAGTGATGGAGTTTTGCAACCATAATGATCTACAGCTCATTGTACGAGCACATGAATGTGTAATGGATGGCT

Fln Alignment:

GG46A6U01DU00V___TFQPDRVMEFCNHNDLQLIVRAHECVMDG
Q9SHS7_______________TFGPDRVMEFCNNNDLQLIVRAHECVMDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain