UniGene Name: sp_v3.0_unigene68021
Length: 245 nt
UniGene Fasta |
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>sp_v3.0_unigene68021
C |
Ace file of the UniGene sp_v3.0_unigene68021 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Ras-related gtp-binding protein n=2 Tax=Micromonas RepID=C1E029_MICSR | - | - | 1.0e-15 | 100% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 89% |
Sma3 | Small GTP-binding protein | - | - | 1.623e-08 | - |
Source | Gene names |
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Sma3 | 24.t00078; 26.t00059; 27.t00047; 40.t00023; ARA-5; AT4g17530; AT5g47200/MQL5_5; At1g02130; At4g17530; At5g47200; At5g47201; CHLREDRAFT_60490; GSVIVT00011421001; GSVIVT00014195001; LeRab1A; LeRab1C; MICPUCDRAFT_31102; MICPUN_90086; MtrDRAFT_AC140549g17v2; |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | Golgi membrane | GO:0000139 | Cellular Component | 0.0 | - |
Sma3 | intracellular | GO:0005622 | Cellular Component | 0.0 | - |
Sma3 | vacuole | GO:0005773 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | GTP binding | GO:0005525 | Molecular Function | 0.0 | - |
Sma3 | ER to Golgi vesicle-mediated transport | GO:0006888 | Biological Process | 0.0 | - |
Sma3 | small GTPase mediated signal transduction | GO:0007264 | Biological Process | 0.0 | - |
Sma3 | protein transport | GO:0015031 | Biological Process | 0.0 | - |
Sma3 | response to cadmium ion | GO:0046686 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Small GTPase superfamily | IPR001806 | - | 0.0 | - |
Sma3 | RNA polymerase sigma factor 54, interaction | IPR002078 | - | 0.0 | - |
Sma3 | IPR003577 | - | 0.0 | - | |
Sma3 | Small GTPase superfamily, Rab type | IPR003579 | - | 0.0 | - |
Sma3 | Small GTP-binding protein domain | IPR005225 | - | 0.0 | - |
Sma3 | IPR013753 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT1G02130.1 | ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 RAS 5 chr1:400350-401788 REVERSE LENGTH=203 | 2.0e-14 | 82% |
RefSeq | Arabidopsis thaliana | NP_171715.1 | Ras-related protein RABD2A [Arabidopsis thaliana] | 2.0e-14 | 82% |
RefSeq | Populus trichocarpa | XP_002304305.1 | predicted protein [Populus trichocarpa] | 3.0e-17 | 92% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: A9NPH9
Fln msg: Separated hits, possible frame ERROR between 113 and 128, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 21 aas, your sequence is shorter than subject: 79 - 202
Fln protein:
S
Protein Length:
80
Fln nts:
C
Fln Alignment:
GG46A6U01BKZLN___SSENVNKLLVGNKCDLAANRAVDYDAAKAxxxxxIGIPFLETSAKNATNVEQAFMTMAAEIK
A9NPH9_______________ASENVNKLLVGNKCDLTANRAVDYDTAKAxxxxxIGIPFLETSAKNATNVEQAFMTMAAEIK
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain