SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68005

Length: 320 nt

UniGene Fasta

>sp_v3.0_unigene68005
CGTCGTGACCTTGGCTGTCACTCATTAAGTCTAGGCCTGGGGAGATTATCGAACCCGGTCAATACAAAGTCATAGAAGGTGAAGGTATGCCTCCCCATTCGAGGTCAAGTTGTCTTTACATTCACTTCAATGTTAAGTTTCCACGTGCTGGCTCACTGTCTCCAGATCAGCGCAAGGCATTAGAATTTGCCTTGACACCCCGACCGAGAGTTATGGATATGGATGAAGGCGAAGAGACGACTTTGCAGGATGTTAATATTGAGGAACTAACATTGAAGCGGCAGTTGCTAGACGAGGTTGAAGCTATTAGGCGAAGAAGT

Ace file of the UniGene sp_v3.0_unigene68005

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative DnaJ-like protein MsJ1 [Oryza sativa Japonica Group]	-	-	7.0e-19	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	DnaJ protein	-	-	1.916e-11	-

Source	Gene names
Sma3	A2; A3; ATJ; ATJ2; ATJ3; At3g44110; At5g22060; B38; DNAJ1; F26G5.60; GSVIVT00002640001; GSVIVT00019136001; GSVIVT00037272001; J3; LDJ2; LOC_Os03g57340; OSIGBa0134H18.3; OSJNBb0024J04.9; OSJNBb0034G17.1; Os02g0656500; Os03g0787300; Os04g0549600; OsI_08334;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G44110.1	ATJ3, ATJ DNAJ homologue 3 chr3:15869115-15871059 REVERSE LENGTH=420	1.0e-20	55%
RefSeq	Arabidopsis thaliana	NP_189997.1	chaperone protein dnaJ 3 [Arabidopsis thaliana]	1.0e-20	55%
RefSeq	Populus trichocarpa	XP_002301248.1	predicted protein [Populus trichocarpa]	2.0e-23	53%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK86

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 106 - 189

Fln protein: S*PWLSLIKSRPGEIIEPGQYKVIEGEGMPPHSRSSCLYIHFNVKFPRAGSLSPDQRKALEFALTPRPRVMDMDEGEETTLQDVNIEELTLKRQLLDEVEAIRRRS

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTAAGTCTAGGCCTGGGGAGATTATCGAACCCGGTCAATACAAAGTCATAGAAGGTGAAGGTATGCCTCCCCATTCGAGGTCAAGTTGTCTTTACATTCACTTCAATGTTAAGTTTCCACGTGCTGGCTCACTGTCTCCAGATCAGCGCAAGGCATTAGAATTTGCCTTGACACCCCGACCGAGAGTTATGGATATGGATGAAGGCGAAGAGACGACTTTGCAGGATGTTAATATTGAGGAACTAACATTGAAGCGGCAGTTGCTAGACGAGGTTGAAGCTATTAGGCGAAGAAGT

Fln Alignment:

GG46A6U01ETSUD___LIKSRPGEIIEPGQYKVIEGEGMPPHSR---SSCLYIHFNVKFPRAGSLSPDQRKALEFALTPRP----RVMDMDEGEETTLQDVNIEELTLKRQLLDEVEA
A9NK86_______________LIKSSPGEIIKPSQYKAINDEGMPQYQRPFMKGRLYIHFNVEFPESGALSPEQCKALESILPPRPAGYMTDMELDECEETTLHDVNIEDELRRKQQQQQQEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain