SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67987

Length: 199 nt

UniGene Fasta

>sp_v3.0_unigene67987
CGTCGTGACCTTGGCTGTCACTCATTGTTACATGGGTCGACACATCAAAGATCAAGAGGAAAGTGTTGCAATACAATGAGCGTTTAGATGATTATGATCTTCTCAATTAGGAATCTGGAGTGCTGATTTAGGATTCTTATATCTCCTACGTTCTCTGTATTTGATCACTGCGGATTTGCTAAATGTACATTCTGTACTT

Ace file of the UniGene sp_v3.0_unigene67987

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ribosomal-like protein [Atropa belladonna]	-	-	6.0e-06	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%

Source	Gene names
Sma3	CHLREDRAFT_182824; GSVIVT00038090001; PHYPADRAFT_48659; POPTRDRAFT_584628; POPTRDRAFT_673090; RCOM_0790970; RNP3;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S4/S9, N-terminal	IPR001912	-	0.0	-
Sma3	RNA-binding S4 domain	IPR002942	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK18

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 36 - 182

Fln protein: S*PWLSLIVTWVDTSKIKRKVLQYNERLDDYDLLN*

Protein Length: 37

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTACATGGGTCGACACATCAAAGATCAAGAGGAAAGTGTTGCAATACAATGAGCGTTTAGATGATTATGATCTTCTCAATTAG___GAATCTGGAGTGCTGATTTAGGATTCTTATATCTCCTACGTTCTCTGTATTTGATCACTGCGGATTTGCTAAATGTACATTCTGTACTT

Fln Alignment:

GG46A6U01C3GT4___VTWVDTSKIKRKVLQYNERLDDYDLLN
A9NK18_______________VTWVDTSKIKRKVLQYNERLDDYDLLN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain