SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67979

Length: 145 nt

UniGene Fasta

>sp_v3.0_unigene67979
GGCTACTATTCAGAGGAGATGGTGGAAGCTCAAGGTGGACCAACTTGTATTTTGAGGAGTTAGTTCGGGAATGTTTTCCTAAGTTGGTCAGTCATTTGGACAAGTTGGGCATAGAGGTGGCACTGGTCACTGGGCCATGGTTCCT

Ace file of the UniGene sp_v3.0_unigene67979

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gb\|AEE79329.1\| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]	-	-	4.0e-08	68%
FL-Next	tr=Run and tbc1 domain containing 3, plant, putative; Ricinus communis (Castor bean).	-	-	0.0	71%
Sma3	Os01g0835000 protein	-	-	9.26e-06	-

Source	Gene names
Sma3	Os01g0835000; OsI_04332; OsJ_03987; P0506B12.13; POPTRDRAFT_227764; RCOM_0744140;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	Rab GTPase activator activity	GO:0005097	Molecular Function	-
Sma3	regulation of Rab GTPase activity	GO:0032313	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315267.1	predicted protein, partial [Populus trichocarpa]	3.0e-11	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SGD5

Fln msg: Distance to subject end: 430 aas, your sequence is shorter than subject: 47 - 845

Fln protein: LLFRGDGGSSRWTNLYFEELVRECFPKLVSHLDKLGIEVALVTGPWF

Protein Length: 48

Fln nts: GGCTACTATTCAGAGGAGATGGTGGAAGCTCAAGGTGGACCAACTTGTATTTTGAGGAGTTAGTTCGGGAATGTTTTCCTAAGTTGGTCAGTCATTTGGACAAGTTGGGCATAGAGGTGGCACTGGTCACTGGGCCATGGTTCCT

Fln Alignment:

GG46A6U01DB21S___SRWTNLYFEELVRECFPKLVSHLDKLGIEVALVTGPWF
B9SGD5_______________SQVDQLAFEELVRERFPKLVNHLDYLGVQVAWVTGPWF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain