SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67969

Length: 214 nt

UniGene Fasta

>sp_v3.0_unigene67969
CGTCGTGACCTTGGCTGTCACTCATACTGTATCCGAGCATCCAGATGCAATACTTTTCTCACTAGTTCCAATTACATCCCTTTTGACAGGGGTTGTTGGCAGCGGTTTCTTAAGTCATGCTATCAATCTATACCTTCGTTGTAAGTGCTGTTTGAATAATTTAAGCATATGGATTTTGAACTTTTGATTAAAAAATAAGGATAGGAACTAAATG

Ace file of the UniGene sp_v3.0_unigene67969

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MAC/Perforin domain-containing protein [Arabidopsis thaliana] gb\|AEE84885.1\| MAC/Perforin domain-containing protein [Arabidopsis thaliana]	-	-	6.0e-09	75%
FL-Next	Isoform 2 of MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290	-	-	0.0	75%

Source	Gene names
Sma3	AT4g24290; At4g24290; GSVIVT00003061001; GSVIVT00019234001; GSVIVT00033508001; GSVIVT00035282001; MtrDRAFT_AC140550g15v2; OJ1214_E03.15; Os02g0475300; Os02g0736300; Os05g0557400; Os06g0251100; OsI_07190; OsI_08850; OsI_20937; OsI_22388; OsJ_06716; OsJ_083

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Membrane attack complex component/perforin/complement C9	IPR001862	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24290.2	MAC/Perforin domain-containing protein chr4:12594856-12597815 FORWARD LENGTH=606	3.0e-11	72%
RefSeq	Arabidopsis thaliana	NP_567698.1	MAC/Perforin domain-containing protein [Arabidopsis thaliana]	7.0e-13	75%
RefSeq	Populus trichocarpa	XP_002321099.1	predicted protein [Populus trichocarpa]	1.0e-14	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9STW5-2

Fln msg: your sequence is shorter than subject: 62 - 350

Fln protein: VVTLAVTHTVSEHPDAILFSLVPITSLLTGVVGSGFLSHAINLYLRCKCCLNNLSIWILNF*

Protein Length: 63

Fln nts: CGTCGTGACCTTGGCTGTCACTCATACTGTATCCGAGCATCCAGATGCAATACTTTTCTCACTAGTTCCAATTACATCCCTTTTGACAGGGGTTGTTGGCAGCGGTTTCTTAAGTCATGCTATCAATCTATACCTTCGTTGTAAGTGCTGTTTGAATAATTTAAGCATATGGATTTTGAACTTTTGA___TTAAAAAATAAGGATAGGAACTAAATG

Fln Alignment:

GG46A6U01ATH35___TVSEHPDAILFSLVPITSLLTGVVGSGFLSHAINLYLRCK
Q9STW5-2_____________TVQMEPDVISMSFIPITSLLNGVPGSGFLSHAINLYLRCK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain