SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67951

Length: 347 nt

UniGene Fasta

>sp_v3.0_unigene67951
CGTCGTGACCTTGGCTGTCACTCATGTGTTTGTGATATTGCACCTACAGATGCAAAAAGAGTCTTACAGTTTGGATGATTGTGCAGGCTGTTCAATTATGGAGTTGGCATACATTTGCTGCAAAGTAAGAATCCAGAGGATTTGCCCAAGAAATCTGAGATTAATCCAAGGGATAATCACTTATCCTTCCAGGTATAGTTACACTGAGGAGCAATGACTATTCATGTTAATCATGGTTTGTGCACTTCGCTTGTATCATTGAGATGGTTTGATTAATATATTTGATTGTGGATTACATATGTGCAGTGTGAGGACATGCAGGTGGTGGAGATGAAGCTGCAAGATAT

Ace file of the UniGene sp_v3.0_unigene67951

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana] gb\|AEE36365.1\| lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]	-	-	4.0e-08	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Lactoylglutathione lyase, putative	-	-	3.174e-08	-

Source	Gene names
Sma3	AT1G80160; At1g80160; F18B13.24; GSVIVT00000378001; GSVIVT00000379001; Os05g0171900; OsI_18636; OsJ_17296; P0685E10.15; POPTRDRAFT_413700; POPTRDRAFT_640628; RCOM_0221430; RCOM_0898830; VITISV_040444;

Source	GOs	Term	Type	e value	Identity
Sma3	lyase activity	GO:0016829	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein chr1:30151101-30151930 FORWARD LENGTH=167	2.0e-11	71%
RefSeq	Arabidopsis thaliana	NP_001077851.1	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]	4.0e-12	72%
RefSeq	Populus trichocarpa	XP_002298106.1	predicted protein [Populus trichocarpa]	4.0e-14	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNA7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 97 aas, your sequence is shorter than subject: 115 - 204

Fln protein: RRDLGCHSCVCDIAPTDAKRVLQFG*LCRLFNYGVGIHLLQSKNPEDLPKKSEINPRDNHLSFQV*LH*GAMTIHVNHGLCTSLVSLRWFD*YI*LWITYVQCEDMQVVEMKLQD

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGTTTGTGATATTGCACCTACAGATGCAAAAAGAGTCTTACAGTTTGGATGATTGTGCAGGCTGTTCAATTATGGAGTTGGCATACATTTGCTGCAAAGTAAGAATCCAGAGGATTTGCCCAAGAAATCTGAGATTAATCCAAGGGATAATCACTTATCCTTCCAGGTATAGTTACACTGAGGAGCAATGACTATTCATGTTAATCATGGTTTGTGCACTTCGCTTGTATCATTGAGATGGTTTGATTAATATATTTGATTGTGGATTACATATGTGCAGTGTGAGGACATGCAGGTGGTGGAGATGAAGCTGCAAGATAT

Fln Alignment:

GG46A6U01D3FGL___LFNYGVGIHLLQSKNPEDLPKKSEINPRDNHLSFQV*LH*GAMTIHVNHGLCTSLVSLRWFD*YI*LWITYVQCEDMQVVEMKLQD
B8LNA7_______________LFNYGIGIHLLQSKDPDSLPKKTEINPRDNHISF--------------------------------------QCEDVQVVERKLQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain