SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67911

Length: 372 nt

UniGene Fasta

>sp_v3.0_unigene67911
CGTCGTGACCTTGGCTGTCACTCAATGTTGTTCGTAAAGAAGAAAGATTTTACTCTTAGATTGTGCATTGATTACAGGCAGTTGAACAAGGTAACGATCAAGAATAGGTACCCTTTTTTAAGGATTGATGATTTGATTGATCAGCTAATTGGAGAAACAATGTTCTTTAAGATCATCTTGAGATCAGGATATCATCAGGTATGCATCAAGGAAGAGGATATATTCAAGTCTGTGTTTAGGACCAAGTATGGGAATTATGTAGTTTGTTGTTGTTTCGTTTGGCTTAACTAATGCTCCAACTACATTCATGTGTTTGATGATAGCGTGTTGCGCCCTCATTTGGACTAAGTTTGTTATTGTATTCATTGATGA

Ace file of the UniGene sp_v3.0_unigene67911

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UUH7_ORYSJ	-	-	3.0e-29	66%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	53%
Sma3	Retrotransposon protein, putative, Ty3-gypsy subclass	-	-	3.13e-34	-

Source	Gene names
Sma3	AT4g10580; B1234D02.1; H0207B04.5; H0211F06-OSIGBa0153M17.10; H0409D10.7; H0502G05.10; H0512B01.1; H0616A11.3; H0624F09.1; H0807C06-H0308C08.9; H0813E03.8; H0818H01.18; H0820C10.2; LOC_Os03g15160; LOC_Os03g23110; LOC_Os03g23220; LOC_Os03g23800; LOC_Os03g2

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 31 aas, your sequence is shorter than subject: 89 - 142

Fln protein: MLFVKKKDFTLRLCIDYRQLNKVTIKNRYPFLRIDDLIDQLIGETMFFKIILRSGYHQVCIKEEDIFKSVFRTKYGNYVVCCCFVWLN*

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCA_-_ATGTTGTTCGTAAAGAAGAAAGATTTTACTCTTAGATTGTGCATTGATTACAGGCAGTTGAACAAGGTAACGATCAAGAATAGGTACCCTTTTTTAAGGATTGATGATTTGATTGATCAGCTAATTGGAGAAACAATGTTCTTTAAGATCATCTTGAGATCAGGATATCATCAGGTATGCATCAAGGAAGAGGATATATTCAAGTCTGTGTTTAGGACCAAGTATGGGAATTATGTAGTTTGTTGTTGTTTCGTTTGGCTTAACTAATGCTCCAACTACATTCATGTGTTTGATGATAGCGTGTTGCGCCCTCATTTGGACTAAGTTTGTTATTGTATTCATTGATGA

Fln Alignment:

GG46A6U01DA44F___DFTLRLCIDYRQLNKVTIKNRYPFLRIDDLIDQLIGETMFFKIILRSGYHQVCIKEEDIFKSVFRTKYGNY
P31843_______________ELSLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain