SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67888

Length: 413 nt

UniGene Fasta

>sp_v3.0_unigene67888
CGTCGTGACCTTGGCTGTCACTCAAGTTCGCAGGTAGCAAGAGAGTTCAAGATTTACAGGTAGCAAAAGAGTTCAAGTAATGGGTAGAGTGAAAATAGAGATCAAGAGGATAGAAAATCCAACGAACAGGAAGGCCACCTTCTGCAAGCGAAGAGCAGGTCTGTTCAAGAAGGCCAGAGAATTGTCTGTCCTCTGCGATGCAGAAATAGCAGTTCTCGTATTTTCAAGTGACAATCACTTTTTCAAAATTNCCGGGGGAGCCAGATATGGAAAGCGTAATGCATCGTTACAGCAAATTATCCGAACAAACAGAATCTCGTGACTCAATTGAATGCAGCGATAATAATCACAATAAAAACCAGATCATCCAAGCGCCGGAGGTAAAGTTTCAGGCGGAACAGCTGCAGACGATG

Ace file of the UniGene sp_v3.0_unigene67888

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AGAMOUS homolog (Fragment) n=2 Tax=Liquidambar RepID=Q9XHM3_LIQST	-	-	2.0e-15	68%
FL-Next	tr=MADS box transcription factor; Pinus resinosa (Red pine) (Norway pine).	-	-	0.0	71%
Sma3	AGAMOUS-like protein	-	-	3.794e-28	-

Source	Gene names
Sma3	AG; AG-1; AG-2; AG1; AG1-T2; AG2; AGAMOUS; AGL; AGL1; AGL11; AGL12; AGL15; AGL31; AGL39; AGL9; AGa; AGb; AOM2; AP3-2; AP3-3; AVAG1; AVAG2; ApMADS2; At1g71692; At3g58780; At4g09960; At4g18960; At5g13790; BsAP3; CAG1; CAG2; CAG3; CCDEF; CMADS3; CMB; CMR3; C

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	indeterminate inflorescence morphogenesis	GO:0048283	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	carpel development	GO:0048440	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	maintenance of floral organ identity	GO:0048497	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Transcription factor, K-box	IPR002487	-	-
Sma3	Protein of unknown function DUF538	IPR007493	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G09960.3	STK, AGL11 K-box region and MADS-box transcription factor family protein chr4:6236713-6240494 REVERSE LENGTH=256	4.0e-19	69%
RefSeq	Arabidopsis thaliana	NP_849351.1	agamous-like MADS-box protein AGL11 [Arabidopsis thaliana]	4.0e-19	69%
RefSeq	Populus trichocarpa	XP_002305048.1	predicted protein [Populus trichocarpa]	1.0e-19	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9ZTY6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 111 aas, your sequence is shorter than subject: 81 - 222

Fln protein: MGRVKIEIKRIENPTNRKATFCKRRAGLFKKARELSVLCDAEIAVLVFSSDNHFFKITGGARYGKRNASLQQIIRTNRIS*

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCGCAGGTAGCAAGAGAGTTCAAGATTTACAGGTAGCAAAAGAGTTCAAGTA_-_ATGGGTAGAGTGAAAATAGAGATCAAGAGGATAGAAAATCCAACGAACAGGAAGGCCACCTTCTGCAAGCGAAGAGCAGGTCTGTTCAAGAAGGCCAGAGAATTGTCTGTCCTCTGCGATGCAGAAATAGCAGTTCTCGTATTTTCAAGTGACAATCACTTTTTCAAAATTaCCGGGGGAGCCAGATATGGAAAGCGTAATGCATCGTTACAGCAAATTATCCGAACAAACAGAATCTCGTGACTCAATTGAATGCAGCGATAATAATCACAATAAAAACCAGATCATCCAAGCGCCGGAGGTAAAGTTTCAGGCGGAACAGCTGCAGACGATG

Fln Alignment:

GG46A6U01EAU9Y___MGRVKIEIKRIENPTNRKATFCKRRAGLFKKARELSVLCDAEIAVLVFSSDNHFFK
Q9ZTY6_______________MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain