UniGene Name: sp_v3.0_unigene67865
Length: 155 nt
UniGene Fasta |
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>sp_v3.0_unigene67865
C |
Ace file of the UniGene sp_v3.0_unigene67865 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Plastid CUL1 n=1 Tax=Hevea brasiliensis RepID=D8V3L8_HEVBR | - | - | 4.0e-11 | 87% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 96% |
Source | Gene names |
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Sma3 | At4g02570; CUL1; CUL1-C; CUL1-G; GSVIVT00019763001; GSVIVT00023565001; OJ1504_G04.11; OSJNBa0010P20.16; Os01g0369000; Os05g0149600; OsI_01951; OsI_18469; OsJ_01786; OsJ_17132; P0043B10.31; P0560B06.30; PHYPADRAFT_107536; PHYPADRAFT_167405; PHYPADRAFT_1923 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | condensed nuclear chromosome | GO:0000794 | Cellular Component | 0.0 | - |
Sma3 | spindle | GO:0005819 | Cellular Component | 0.0 | - |
Sma3 | phragmoplast | GO:0009524 | Cellular Component | 0.0 | - |
Sma3 | cullin-RING ubiquitin ligase complex | GO:0031461 | Cellular Component | 0.0 | - |
Sma3 | ubiquitin protein ligase binding | GO:0031625 | Molecular Function | 0.0 | - |
Sma3 | ubiquitin-dependent protein catabolic process | GO:0006511 | Biological Process | 0.0 | - |
Sma3 | cell cycle | GO:0007049 | Biological Process | 0.0 | - |
Sma3 | auxin mediated signaling pathway | GO:0009734 | Biological Process | 0.0 | - |
Sma3 | embryo development ending in seed dormancy | GO:0009793 | Biological Process | 0.0 | - |
Sma3 | jasmonic acid mediated signaling pathway | GO:0009867 | Biological Process | 0.0 | - |
Sma3 | ethylene mediated signaling pathway | GO:0009873 | Biological Process | 0.0 | - |
Sma3 | SCF complex assembly | GO:0010265 | Biological Process | 0.0 | - |
Sma3 | regulation of circadian rhythm | GO:0042752 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Cullin, N-terminal | IPR001373 | - | 0.0 | - |
Sma3 | Protein translocase complex, SecE/Sec61-gamma subunit | IPR001901 | - | 0.0 | - |
Sma3 | Winged helix-turn-helix transcription repressor DNA-binding | IPR011991 | - | 0.0 | - |
Sma3 | Cullin, conserved site | IPR016157 | - | 0.0 | - |
Sma3 | Cullin homology | IPR016158 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT4G02570.1 | ATCUL1, CUL1, AXR6 cullin 1 chr4:1129315-1133435 FORWARD LENGTH=738 | 4.0e-12 | 80% |
RefSeq | Arabidopsis thaliana | NP_001190661.1 | cullin 1 [Arabidopsis thaliana] | 6.0e-12 | 80% |
RefSeq | Populus trichocarpa | XP_002330364.1 | predicted protein [Populus trichocarpa] | 4.0e-13 | 83% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: B8LQB2
Fln msg: Overlapping hits, possible frame ERROR between 118 and 112, Distance to subject end: 495 aas, your sequence is shorter than subject: 51 - 744
Fln protein:
V
Protein Length:
52
Fln nts:
C
Fln Alignment:
GG46A6U01CH45L___YYSRKAASWILEDSCQDYMLKAEECLKRExxRVSHYLHSSSEQ
B8LQB2_______________YYSRKAASWILEDSCPDYMLKAEECLKRExxRVAHYLHSSSEQ
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain