SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67862

Length: 323 nt

UniGene Fasta

>sp_v3.0_unigene67862
CGTCGTGACCTTGGCTGTCACTCAATCCCGCAAGCTTTCCAATTAGCAAATTGGTTCCCTTTGCACCGCGTATCCCGTACGCAAAAATGGCTGCTTCTATGAAAATCTTCGCAGGCATTGCTGTAATGGTGTTTATTATGTGTTCGATTAATCATACTGCGTATGGGCAACTGAGCTCCACGTTTTATGACAAGTCTTGTCCCAAGGCCTTGTCAATAGTGCAAGCCGGGGTGAAGCAGGCTGTTGCAAATGAGAAACGCATGGGGGCTTCGCTTCTACGCCTTCACTTCCACGACTGCTTCGTTAATGGTTGCGATGGGTCC

Ace file of the UniGene sp_v3.0_unigene67862

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Properoxidase n=1 Tax=Picea abies RepID=Q0JW34_PICAB	-	-	7.0e-26	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Peroxidase	-	-	7.542e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	At1g14550; At5g66390; F14L17.33; FBP3; GSVIVT00009699001; GSVIVT00015159001; GSVIVT00024717001; GSVIVT00024724001; GSVIVT00035148001; GSVIVT00035149001; GSVIVT00035150001; GSVIVT00035155001; GSVIVT00035157001; K1F13.4; K1L20.16; LOC_Os03g22010; LOC_Os10g0

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05340.1	Peroxidase superfamily protein chr5:1579142-1580819 REVERSE LENGTH=324	1.0e-19	51%
RefSeq	Arabidopsis thaliana	NP_196153.1	peroxidase 52 [Arabidopsis thaliana]	1.0e-19	51%
RefSeq	Populus trichocarpa	XP_002334243.1	predicted protein [Populus trichocarpa]	1.0e-20	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZA1

Fln msg: Distance to subject end: 244 aas, your sequence is shorter than subject: 79 - 323

Fln protein: MAASMKIFAGIAVMVFIMCSINHTAYGQLSSTFYDKSCPKALSIVQAGVKQAVANEKRMGASLLRLHFHDCFVNGCDGS

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCCGCAAGCTTTCCAATTAGCAAATTGGTTCCCTTTGCACCGCGTATCCCGTACGCAAAA_-_ATGGCTGCTTCTATGAAAATCTTCGCAGGCATTGCTGTAATGGTGTTTATTATGTGTTCGATTAATCATACTGCGTATGGGCAACTGAGCTCCACGTTTTATGACAAGTCTTGTCCCAAGGCCTTGTCAATAGTGCAAGCCGGGGTGAAGCAGGCTGTTGCAAATGAGAAACGCATGGGGGCTTCGCTTCTACGCCTTCACTTCCACGACTGCTTCGTTAATGGTTGCGATGGGTCC

Fln Alignment:

GG46A6U01EJ8I4___MAASMKIFAGIAVMVFIMCSINHTAYGQLSSTFYDKSCPKALSIVQAGVKQAVANEKRMGASLLRLHFHDCFVNGCDGS
A9NZA1_______________MAAVMKSSGCIAVMVFIICSIANLSHGQLSSTFYDKSCPAALSVVKAAVKQAVAKEQRMGASLLRLHFHDCFVNGCDGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain