SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67855

Length: 319 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene67855
GGGTTTATTGGGTATTATAGAAGATTTATTGAAAACTTCACCAAGATAGCATCTCCGCTCTTCAAATTACTTACAAATGACTGTAAATTCAAATGGGATCCTGAATGCCAATCTGCACTTGAAGCTTTAAAAACAAGGATATCTGAAGCACCCATTCTAAGATGGCCAAATTGGAAACTTCCTTTCCATATTTCTACAAATGCTTCAGATACAGCTCTAGGGGTTGTATTGGGACAAAAGGATTTGGTCCCTTATGCCATTTACTACACCAGTAAAAATTTGACTCCCACCGAGTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene67855 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	43%

Source	Gene names
Sma3	GSVIVT00000833001; VITISV_000409; VITISV_000510; VITISV_001289; VITISV_001382; VITISV_002499; VITISV_002563; VITISV_003082; VITISV_003208; VITISV_003321; VITISV_003421; VITISV_003603; VITISV_003687; VITISV_004701; VITISV_004922; VITISV_005022; VITISV_0051

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: STOP codon was not found. Distance to subject end: 17 aas, your sequence is shorter than subject: 106 - 158

Fln protein: GFIGYYRRFIENFTKIASPLFKLLTNDCKFKWDPECQSALEALKTRISEAPILRWPNWKLPFHISTNASDTALGVVLGQKDLVPYAIYYTSKNLTPTELSDSQGHD

Protein Length: 107

Fln nts: GGGTTTATTGGGTATTATAGAAGATTTATTGAAAACTTCACCAAGATAGCATCTCCGCTCTTCAAATTACTTACAAATGACTGTAAATTCAAATGGGATCCTGAATGCCAATCTGCACTTGAAGCTTTAAAAACAAGGATATCTGAAGCACCCATTCTAAGATGGCCAAATTGGAAACTTCCTTTCCATATTTCTACAAATGCTTCAGATACAGCTCTAGGGGTTGTATTGGGACAAAAGGATTTGGTCCCTTATGCCATTTACTACACCAGTAAAAATTTGACTCCCACCGAGTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

GG46A6U01AT1OH___GFIGYYRRFIENFTKIASPLFKLLTNDCKFKWDPECQSALEALKTRISEAPILRWPNWKLPF
P92523_______________GLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain