SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67826

Length: 216 nt

UniGene Fasta

>sp_v3.0_unigene67826
CGTCGTGACCTTGGCTGTCACTCACATATTGGAAAGATTGAGGACTGCTTTCTTGATCCTGAAAGCATTGTGTGTGTTAGAAGGGTCAATGCTCTAGCAGAGGGATACTGGAATCAGTTTGTTGCAGAGGAAGTTACTGAAATGAAGGGTCATCTCTTAAAGTACCCATTAAAAGTAGATGCAGATGGTAGTGTTGGACCATGCCAGAACGTTCAA

Ace file of the UniGene sp_v3.0_unigene67826

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phospholipase D n=1 Tax=Picea sitchensis RepID=B8LQ49_PICSI	-	-	2.0e-16	67%
FL-Next	sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase D.	EC:3.1.4.4	-	1.117e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycerophospholipid metabolism	00564	1.117e-09	%
Sma3	Ether lipid metabolism	00565	1.117e-09	%
Sma3	Metabolic pathways	01100	1.117e-09	%

Source	Gene names
Sma3	PLD; PLDb2; POPTRDRAFT_1067075; POPTRDRAFT_730956; POPTRDRAFT_755219; RCOM_1613030; pldb;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	phospholipase D activity	GO:0004630	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phosphatidylcholine metabolic process	GO:0046470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase D, plant	IPR011402	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G42010.1	PLDBETA1, PLDBETA phospholipase D beta 1 chr2:17533018-17537990 REVERSE LENGTH=1083	4.0e-18	55%
RefSeq	Arabidopsis thaliana	NP_565963.2	phospholipase D [Arabidopsis thaliana]	5.0e-18	55%
RefSeq	Populus trichocarpa	XP_002299568.1	predicted protein [Populus trichocarpa]	5.0e-20	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ49

Fln msg: Distance to subject end: 22 aas, your sequence is shorter than subject: 72 - 861

Fln protein: RRDLGCHSHIGKIEDCFLDPESIVCVRRVNALAEGYWNQFVAEEVTEMKGHLLKYPLKVDADGSVGPCQNVQ

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCACATATTGGAAAGATTGAGGACTGCTTTCTTGATCCTGAAAGCATTGTGTGTGTTAGAAGGGTCAATGCTCTAGCAGAGGGATACTGGAATCAGTTTGTTGCAGAGGAAGTTACTGAAATGAAGGGTCATCTCTTAAAGTACCCATTAAAAGTAGATGCAGATGGTAGTGTTGGACCATGCCAGAACGTTCAA

Fln Alignment:

GG46A6U01EUWJZ___HIGKIEDCFLDPESIVCVRRVNALAEGYWNQFVAEEVTEMKGHLLKYPLKVDADGSVGP
B8LQ49_______________HLGLLEDTFNNPQSLDCVRRVNELAEKYWQQFTAEEVIKIKGHLLKYPLKVEADGKVVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain