SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67785

Length: 191 nt

UniGene Fasta

>sp_v3.0_unigene67785
CGTCGTGACCTTGGCTGTCACTCATGTCCTTCTGGAATCGCTCTGATGACAGCAAAAGGGAACATTTGTACGGGATTTTATATTGAGTCTGCAGCATTCAACCCCAGCCTTTCTCCTTTGCAAGCGGCTCTCGTTGCATTTCTTTGTCAGGATGGAGGAAACTATGAAGATATTATCCATGCTGTGCTTGT

Ace file of the UniGene sp_v3.0_unigene67785

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytidine deaminase n=1 Tax=Picea sitchensis RepID=A9NWW0_PICSI	-	-	7.0e-23	90%
FL-Next	sp=Cytidine deaminase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	PHYPADRAFT_123605; RCOM_1047720;

Source	GOs	Term	Type	Identity
Sma3	cytidine deaminase activity	GO:0004126	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	cytidine metabolic process	GO:0046087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	CMP/dCMP deaminase, zinc-binding	IPR002125	-	-
Sma3	Cytidine deaminase, homodimeric	IPR006263	-	-
Sma3	Cytidine/deoxycytidylate deaminase, zinc-binding domain	IPR013171	-	-
Sma3	APOBEC/CMP deaminase, zinc-binding	IPR016192	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G19570.1	CDA1, AT-CDA1, DESZ cytidine deaminase 1 chr2:8470598-8471503 REVERSE LENGTH=301	4.0e-13	51%
RefSeq	Arabidopsis thaliana	NP_179547.1	cytidine deaminase 1 [Arabidopsis thaliana]	5.0e-13	51%
RefSeq	Populus trichocarpa	XP_002308296.1	predicted protein [Populus trichocarpa]	5.0e-14	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWW0

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 63 - 338

Fln protein: RRDLGCHSCPSGIALMTAKGNICTGFYIESAAFNPSLSPLQAALVAFLCQDGGNYEDIIHAVL

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCCTTCTGGAATCGCTCTGATGACAGCAAAAGGGAACATTTGTACGGGATTTTATATTGAGTCTGCAGCATTCAACCCCAGCCTTTCTCCTTTGCAAGCGGCTCTCGTTGCATTTCTTTGTCAGGATGGAGGAAACTATGAAGATATTATCCATGCTGTGCTTGT

Fln Alignment:

GG46A6U01EXNC8___CPSGIALMTAKGNICTGFYIESAAFNPSLSPLQAALVAFLCQDGGNYEDIIHAVL
A9NWW0_______________CPSGIALMTTKGKICTGFYIESAAFNPSLSPLQAAIVAFICQDGGNYEDIVHAVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain