SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67770

Length: 442 nt

UniGene Fasta

>sp_v3.0_unigene67770
CGTCGTGACCTTGGCTGTCACTCAACGAACAATGGCCACGGTTCGCACGACTGTGGGTGGACCGCGGTCCCGTTCAGGCACCCGGCCACGTTCTCGACTTTGGCGCTCGACCCGGAGCTCTTGGAGAGGATCAAGGCGGACCTCGATTCGTTTGGGCAGGGTAAAGAGTTTTACCACAGAGTCGGGCGCGCGTGGAAGCGCGGGTATCTTCTCCACGGCATGCCCGGGACGGGCAAATCAAGCTTGATCGCTGCCATGGCGAATTACCTCCACTACGATGTGTATGACCTGGAATTGACGAAAGTGACAGACAATTCCGAGCTCAGGGCGCTTCTGATTCAAACGACGAACAAATCTATTATCGTCATAGAAGACATCGATTGTTCTATTGATCTCACGGAGCGGGCTCCCGGCAGAGTGGTTCAGGCTCCGAGACGAACCG

Ace file of the UniGene sp_v3.0_unigene67770

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9REM7_RICCO	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	ATP binding protein, putative	-	-	3.056e-24	-

Source	Gene names
Sma3	ACRE102; AT4g30250; At1g43910; At1g43910/F9C16_7; At2g18190; At2g18193; At2g46620; At3g28510; At3g28540; At3g28580; At3g28600; At3g50930; At3g50940/F18B3_220; At4g05380; At4g25835; At4g30250; At5g17730; At5g17740; At5g17760; At5g40010; At5g57480; F18B3.21

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3		IPR001984	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase-like, arabidopsis	IPR007942	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57480.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr5:23279406-23280968 REVERSE LENGTH=520	64%
RefSeq	Arabidopsis thaliana	NP_200556.1	AAA-type ATPase family protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002330900.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2H4

Fln msg: Distance to subject end: 176 aas, your sequence is shorter than subject: 147 - 341

Fln protein: RRDLGCHSTNNGHGSHDCGWTAVPFRHPATFSTLALDPELLERIKADLDSFGQGKEFYHRVGRAWKRGYLLHGMPGTGKSSLIAAMANYLHYDVYDLELTKVTDNSELRALLIQTTNKSIIVIEDIDCSIDLTERAPGRVVQAPRRT

Protein Length: 148

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACGAACAATGGCCACGGTTCGCACGACTGTGGGTGGACCGCGGTCCCGTTCAGGCACCCGGCCACGTTCTCGACTTTGGCGCTCGACCCGGAGCTCTTGGAGAGGATCAAGGCGGACCTCGATTCGTTTGGGCAGGGTAAAGAGTTTTACCACAGAGTCGGGCGCGCGTGGAAGCGCGGGTATCTTCTCCACGGCATGCCCGGGACGGGCAAATCAAGCTTGATCGCTGCCATGGCGAATTACCTCCACTACGATGTGTATGACCTGGAATTGACGAAAGTGACAGACAATTCCGAGCTCAGGGCGCTTCTGATTCAAACGACGAACAAATCTATTATCGTCATAGAAGACATCGATTGTTCTATTGATCTCACGGAGCGGGCTCCCGGCAGAGTGGTTCAGGCTCCGAGACGAACCG

Fln Alignment:

GG46A6U01CCSDL___HSTNNGHGSHDCGWTAVPFRHPATFSTLALDPELLERIKADLDSFGQGKEFYHRVGRAWKRGYLLHGMPGTGKSSLIAAMANYLHYDVYDLELTKVTDNSELRALLIQTTNKSIIVIEDIDCSIDLTER
A9P2H4_______________YTNNKGKWGGGPGWTGVPFKHPSSFDSLALDPTHKNKIIRDLDRFRQGKEFHSRVGRPWKRGYLLYGPPGTGKSSLVAAIANYMKYNVYDLELTKVTDNSELRTLLIQTTNKSMIVIEDIDCSLDLSNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain