SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67590

Length: 296 nt

UniGene Fasta

>sp_v3.0_unigene67590
CGTCGTGACCTTGGCTGTCACTCAATCCAGGAGGGCTCATTGAATGAAATTCTGGACAAAACAGCCGGGGAGTGGCCTCTTGAGGAAAGTGAAGAGCTTGCTGAGCTTGCCCTAAAATGCACAGAATTGCGGCGCCAAGACAGACCGGATATGAAGACAGTTATTCTGCCAAAATTAGAACGTCTCAGAGATCTCAAAAAAGCACATGCTGAGGACTGCATCTCCTAGATACTGGCACTGTCCATTACTTCAGTCGGGTTCACCCATTTGCAAAACTTTTATGGAGGAATTGACAT

Ace file of the UniGene sp_v3.0_unigene67590

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative (EC:2.7.10.2)	-	-	6.0e-08	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	E3 ubiquitin ligase	-	-	5.445e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	6.288e-06	-

Source	Gene names
Sma3	At4g25160; At5g61550; F13M23.300; F24A6.13; K11J9.12; POPTRDRAFT_681117; PUB35; PUB52; VITISV_021538;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G61560.1	U-box domain-containing protein kinase family protein chr5:24753476-24756506 FORWARD LENGTH=796	7.0e-11	51%
RefSeq	Arabidopsis thaliana	NP_001190589.1	U-box domain-containing protein 51 [Arabidopsis thaliana]	1.0e-10	51%
RefSeq	Populus trichocarpa	XP_002329029.1	predicted protein, partial [Populus trichocarpa]	2.0e-13	56%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC39

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 23 aas, atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning, your sequence is shorter than subject: 76 - 124

Fln protein: RRDLGCHSIQEGSLNEILDKTAGEWPLEESEELAELALKCTELRRQDRPDMKTVILPKLERLRDLKKAHAEDCIS*

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCAGGAGGGCTCATTGAATGAAATTCTGGACAAAACAGCCGGGGAGTGGCCTCTTGAGGAAAGTGAAGAGCTTGCTGAGCTTGCCCTAAAATGCACAGAATTGCGGCGCCAAGACAGACCGGATATGAAGACAGTTATTCTGCCAAAATTAGAACGTCTCAGAGATCTCAAAAAAGCACATGCTGAGGACTGCATCTCCTAGATACTGGCACTGTCCATTACTTCAGTCGGGTTCACCCATTTGCAAAACTTTTATGGAGGAATTGACAT

Fln Alignment:

GG46A6U01B2CSO___SIQEGSLNEILDKTAGEWPXXXXXXXXXXXXKCTELRRQDRPDMKTVILPKLERLR
D5AC39_______________AIEKGSFKNILDQSVTDWPVREAMELAKLALKCVEMRRRDRPDLETVVLPELQRLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain