SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67580

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene67580
CGTCGTGACCTTGGCTGTCACTCATTATTTATGTTTGCTTTGGAAGCTTCACTGTTATGTCTGAGGATGAACTCCTAGAGTTCGCCTGGGGCTTAGAGGCAAGCAGGCAGCCCTTCTTGTGGTCTATTCGTCCTTATGTCATTCATGGCCAGTCTGCTGTGCTACCTCATGAGTATTTGGAGAAGGTGAAGGACAGAAGTCTCTTTGCTAGCTGGGCCCCACAGATGACAGTG

Ace file of the UniGene sp_v3.0_unigene67580

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase	-	-	5.0e-05	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Chromosome undetermined scaffold_502, whole genome shotgun sequence	-	-	2.095e-08	-

Source	Gene names
Sma3	CtGT4; GSVIVT00013560001; GSVIVT00013561001; GSVIVT00015217001; POPTRDRAFT_1071736; VITISV_038672;

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22400.1	UGT85A1, ATUGT85A1 UDP-Glycosyltransferase superfamily protein chr1:7903851-7906607 REVERSE LENGTH=489	2.0e-19	51%
RefSeq	Arabidopsis thaliana	NP_173656.1	cytokinin-O-glucosyltransferase 2 [Arabidopsis thaliana]	2.0e-19	51%
RefSeq	Populus trichocarpa	XP_002306303.1	predicted protein [Populus trichocarpa]	3.0e-21	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVD1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 118 aas, your sequence is shorter than subject: 77 - 298

Fln protein: S*PWLSLIIYVCFGSFTVMSEDELLEFAWGLEASRQPFLWSIRPYVIHGQSAVLPHEYLEKVKDRSLFASWAPQMTV

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTTATGTTTGCTTTGGAAGCTTCACTGTTATGTCTGAGGATGAACTCCTAGAGTTCGCCTGGGGCTTAGAGGCAAGCAGGCAGCCCTTCTTGTGGTCTATTCGTCCTTATGTCATTCATGGCCAGTCTGCTGTGCTACCTCATGAGTATTTGGAGAAGGTGAAGGACAGAAGTCTCTTTGCTAGCTGGGCCCCACAGATGACAGTG

Fln Alignment:

GG46A6U01DITR6___IIYVCFGSFTVMSEDELLEFAWGLEASRQPFLWSIRPYVIHGQSAVLPHEYLEKVKDRSLFASWAPQMTV
A9NVD1_______________VIYVCFGSIAVMSDQELLELAWGLEASNQPFLWVIRPDLIHGHSAVLPSEFLEKVKDRSFLVRWAPQMKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain