SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67537

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene67537
CGTCGTGACCTTGGCTGTCACTCACTTTTCATCAGCCCATGTATGGCCCCCAGACTCCTCCCCTGGTGGCACCGAACGGTGACATTGGCATCGATGGAATGATCATCAACATTGCCACTGTTCTTGCAGGAGCAGTCACCAATCCCTTTGACACCGGCTATTTCCAAGGCGACGCTGCTGCACCTATGGAGGCAGTCTCTGTCTGCTCGG

Ace file of the UniGene sp_v3.0_unigene67537

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein EXORDIUM like 2 [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana]	-	-	3.0e-13	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Putative phi-1	-	-	2.649e-14	-

Source	Gene names
Sma3	AT4g08950; At1g35140; At4g08950; At4g08950/T3H13.3; At5g64260; EXO; GSVIVT00015200001; GSVIVT00015203001; GSVIVT00015212001; GSVIVT00028047001; LOC_Os10g22990; OSJNBa0095C06.7; Os02g0756600; Os02g0756800; Os02g0757100; Os06g0219900; Os06g0220000; Os08g048

Source	GOs	Term	Type	e value	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64260.1	EXL2 EXORDIUM like 2 chr5:25703980-25704897 FORWARD LENGTH=305	2.0e-18	75%
RefSeq	Arabidopsis thaliana	NP_201231.1	protein EXORDIUM like 2 [Arabidopsis thaliana]	2.0e-18	75%
RefSeq	Populus trichocarpa	XP_002307366.1	predicted protein [Populus trichocarpa]	1.0e-19	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0K4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 53 aas, your sequence is shorter than subject: 69 - 366

Fln protein: S*PWLSLTFHQPMYGPQTPPLVAPNGDIGIDGMIINIATVLAGAVTNPFDTGYFQGDAAAPMEAVSVCS

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTCATCAGCCCATGTATGGCCCCCAGACTCCTCCCCTGGTGGCACCGAACGGTGACATTGGCATCGATGGAATGATCATCAACATTGCCACTGTTCTTGCAGGAGCAGTCACCAATCCCTTTGACACCGGCTATTTCCAAGGCGACGCTGCTGCACCTATGGAGGCAGTCTCTGTCTGCTCGG

Fln Alignment:

GG46A6U01A5XSR___FHQPMYGPQTPPLVAPXXXXXXXXXXXXXATVLAGAVTNPFDTGYFQGDAAAPMEAVSVC
A9P0K4_______________FHQPIYGPQTPPLVAPNGDMGIDGMIINIATVLAGAVTNPFNTGYFQGDAAAPLEAVSAC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain