SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67523

Length: 241 nt

UniGene Fasta

>sp_v3.0_unigene67523
CGTCGTGACCTTGGCTGTCACTCATTCATACACAAACGCCACCGGGTCGAGCTATATTGCGCCTCAGCTTAACAAACTTCAGTTCTTTAAGCCCTCGGATGGCCCCGAGAACTGCTACAATGTCACTAATTTCCCGGATGGCCAGTATTCCATCAGAATGTTCTTCGGCCTCAACGAGGACATTTTGGCCATCCGCGAGCCGCTCTTTGACGTCTCCTTTGAAAGGACACAGGTGTATTCT

Ace file of the UniGene sp_v3.0_unigene67523

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat family protein (Fragment) n=1 Tax=Picea abies RepID=B2KZG7_PICAB	-	-	1.0e-27	78%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	57%
Sma3	Leucine-rich repeat family protein	-	-	1.71e-10	-

Source	Gene names
Sma3	LRR;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G28340.1	AtRLP4, RLP4 receptor like protein 4 chr1:9940175-9943252 FORWARD LENGTH=626	8.0e-18	50%
RefSeq	Arabidopsis thaliana	NP_174156.1	receptor like protein 4 [Arabidopsis thaliana]	1.0e-17	50%
RefSeq	Populus trichocarpa	XP_002329797.1	predicted protein [Populus trichocarpa]	1.0e-19	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1MEL7

Fln msg: Distance to subject end: 498 aas, your sequence is shorter than subject: 80 - 631

Fln protein: VVTLAVTHSYTNATGSSYIAPQLNKLQFFKPSDGPENCYNVTNFPDGQYSIRMFFGLNEDILAIREPLFDVSFERTQVYS

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCATACACAAACGCCACCGGGTCGAGCTATATTGCGCCTCAGCTTAACAAACTTCAGTTCTTTAAGCCCTCGGATGGCCCCGAGAACTGCTACAATGTCACTAATTTCCCGGATGGCCAGTATTCCATCAGAATGTTCTTCGGCCTCAACGAGGACATTTTGGCCATCCGCGAGCCGCTCTTTGACGTCTCCTTTGAAAGGACACAGGTGTATTCT

Fln Alignment:

GG46A6U01BLA7K___TNATGSSYIAPQLNKLQFFKPSDGPENCYNVTNFPDGQYSIRMFFGLNEDILAIREPLFDVSFERTQVYS
I1MEL7_______________TNASTTSYIAPPLKTLRYFPLSEGPSNCYNIYNVPKGHYSIRIFFGLVAQARATDEPLFDISIQGTQIYS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain