SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67440

Length: 380 nt

UniGene Fasta

>sp_v3.0_unigene67440
CGTCGTGACCTTGGCTGTCACTCAATCTGACCCCTAAAGATTCTATGGACCTACTAAATGACACAGTCCTTATGCATCTGAGAGATCATTTCAACAAACCAGGGGTCTCAAAAGAACAATCGTTGGACCAACTTGCTCAAGGAATGGATAGGGGACAAGCAGCTAAACTTTTCTTTCAAACATGCGTTTTAGCTACCCATAAATATGTGAAAGTTGGTCAAGAAGAGGCATATGGAGACGTCAAAATTCGAAGAGGACCAAATCTCTAAACATGTTAGAGGAAGATTTCTTTACAAATTTCATTCTTTATGCTTTCATTGGAGGCTTTGACAAGTTACTCGAATATTCAATCCTGAGGATTACGACTCAATGTCACGGTG

Ace file of the UniGene sp_v3.0_unigene67440

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sister chromatid cohesion 1 protein 1 [Arabidopsis thaliana] sp\|Q9S7T7.2\|SCC11_ARATH RecName: Full=Sister chromatid cohesion 1 protein 1; AltName: Full=Protein DETERMINATE INFERTILE 1; AltName: Full=SCC1 homolog 1 gb\|AAF08982.1\|AF080620_1 SYN1 splice vari	-	-	1.0e-16	53%
FL-Next	Isoform 1 of Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana GN=SYN1	-	-	0.0	53%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05490.1	SYN1, ATREC8, REC8 Rad21/Rec8-like family protein chr5:1624325-1629144 FORWARD LENGTH=627	9.0e-21	53%
RefSeq	Arabidopsis thaliana	NP_196168.1	Sister chromatid cohesion 1 protein 1 [Arabidopsis thaliana]	1.0e-20	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9S7T7-2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 89 - 617

Fln protein: S*PWLSLNLTPKDSMDLLNDTVLMHLRDHFNKPGVSKEQSLDQLAQGMDRGQAAKLFFQTCVLATHKYVKVGQEEAYGDVKIRRGPNL*

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTGACCCCTAAAGATTCTATGGACCTACTAAATGACACAGTCCTTATGCATCTGAGAGATCATTTCAACAAACCAGGGGTCTCAAAAGAACAATCGTTGGACCAACTTGCTCAAGGAATGGATAGGGGACAAGCAGCTAAACTTTTCTTTCAAACATGCGTTTTAGCTACCCATAAATATGTGAAAGTTGGTCAAGAAGAGGCATATGGAGACGTCAAAATTCGAAGAGGACCAAATCTCTAA___ACATGTTAGAGGAAGATTTCTTTACAAATTTCATTCTTTATGCTTTCATTGGAGGCTTTGACAAGTTACTCGAATATTCAATCCTGAGGATTACGACTCAATGTCACGGTG

Fln Alignment:

GG46A6U01BIKX3___SMDLLNDTVLMHLRDHFNKPGVSKEQSLDQLAQGMDRGQAAKLFFQTCVLATHKYVKVGQEEAYGDVKIRRGPNL
Q9S7T7-2_____________SDEMITDSIKSHLKTHFETPGAPQVESLNKLAVGMDRNAAAKLFFQSCVLATRGVIKVNQAEPYGDILIARGPNM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain