SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67425

Length: 406 nt

UniGene Fasta

>sp_v3.0_unigene67425
CGTCGTGACCTTGGCTGTCACTCATGGTGTTCGAGATCGTTATCACATTTGGTCTTGTTTACACTGTCTACGCCACCGCGGCCGACCCGAAGAAGGGCGACCTGGGCACCATTGCTCCCATCGCCATTGGCTTCATCGTGGGGGCCAACATCCTGGCCGCCGGCCCCTTCTCCGGCAGCTCCATGAACCCCGCCCGCTCCTTTGGCCCTGCCGTTGCGAGCGTAGACTTCACCAACAACTGGGTGTACTGGGTAGGCCCCCTGATCGGAGGCGGCCTTGCCGGTCTCGTGTATGCAGGCATCTTCATTAGCGACGAGTCACGCGTTCCCCATGTGCCGCTCCCCGTTTCCGAATTCTGAGATGAGAATGGAGCAGAGGAAGACGAAGAGTTCATAATCGTATCAAT

Ace file of the UniGene sp_v3.0_unigene67425

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aquaporin-like protein n=1 Tax=Picea abies RepID=O65860_PICAB	-	-	0.0	83%
FL-Next	tr=Aquaporin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	83%
Sma3	Tonoplast intrinsic protein	-	-	9.93521e-43	-

Source	Gene names
Sma3	25.t00032; 26.t00032; 31.t00034; AQP; AQP.1; AQP1; AQP5; AQP6; Aqp1; At1g17810; At1g52180; At1g73190; At2g25810; At2g36830; At3g16240; At3g26520; At3g47440; At4g01470; At4g17340; At5g47450; C1275ERIPDM; CT179; DIP; F11O4.1; F17H15.16; F2H15.4; F9I5.3; FCA

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	methylammonium transmembrane transporter activity	GO:0015200	Molecular Function	-
Sma3	urea transmembrane transporter activity	GO:0015204	Molecular Function	-
Sma3	water channel activity	GO:0015250	Molecular Function	-
Sma3	ammonia transmembrane transporter activity	GO:0051739	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	autophagy	GO:0006914	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	urea transport	GO:0015840	Biological Process	-
Sma3	water homeostasis	GO:0030104	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Aquaporin	IPR012269	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Archaeal flagellin, N-terminal	IPR013373	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G16240.1	" DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 delta tonoplast integral protein chr3:5505534-5506788 FORWARD LENGTH=250"	73%
RefSeq	Arabidopsis thaliana	NP_188245.1	aquaporin TIP2-1 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002303357.1	aquaporin, MIP family, TIP subfamily [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: O65860

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 119 - 252

Fln protein: S*PWLSLMVFEIVITFGLVYTVYATAADPKKGDLGTIAPIAIGFIVGANILAAGPFSGSSMNPARSFGPAVASVDFTNNWVYWVGPLIGGGLAGLVYAGIFISDESRVPHVPLPVSEF*

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTGTTCGAGATCGTTATCACATTTGGTCTTGTTTACACTGTCTACGCCACCGCGGCCGACCCGAAGAAGGGCGACCTGGGCACCATTGCTCCCATCGCCATTGGCTTCATCGTGGGGGCCAACATCCTGGCCGCCGGCCCCTTCTCCGGCAGCTCCATGAACCCCGCCCGCTCCTTTGGCCCTGCCGTTGCGAGCGTAGACTTCACCAACAACTGGGTGTACTGGGTAGGCCCCCTGATCGGAGGCGGCCTTGCCGGTCTCGTGTATGCAGGCATCTTCATTAGCGACGAGTCACGCGTTCCCCATGTGCCGCTCCCCGTTTCCGAATTCTGA___GATGAGAATGGAGCAGAGGAAGACGAAGAGTTCATAATCGTATCAAT

Fln Alignment:

GG46A6U01CYGRF___MVFEIVITFGLVYTVYATAADPKKGDLGTIAPIAIGFIVGANILAAGPFSGSSMNPARSFGPAVASVDFTNNWVYWVGPLIGGGLAGLVYAGIFISDESRVPHVPLPVSEF
O65860_______________VVMEIVITFALIYTVYATAADPKKGDLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFDPAVVSGDFTDNWVYWVGPLIGGGLAGIVYRGIFIGDDL---HVPLPVSDF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain