SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67351

Length: 314 nt

UniGene Fasta

>sp_v3.0_unigene67351
CGTCGTGACCTTGGCTGTCACTCATTGTGTTTGAATGAAATTTCGAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAGTCATGTCATACATTCGCCTGCAAAGAAATCTTGCAGGTTTTGATCAAAATACTAGGCATTGCTTATATGGGTTGGTAAGTGTTTCATTTTTCAAGGATAAGGAAATTAAAGTTACTTTAGATATGGAAATGTTGCTGTTGGTAAATGCCTGTGTCCCAATGGCTGTAGGATGCTGATCTAATCATGTTAGCATTGTCTACTCATGAGGTGCACTTCTCTA

Ace file of the UniGene sp_v3.0_unigene67351

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5'-3' exoribonuclease 3 [Arabidopsis thaliana] sp\|Q9FQ03.1\|XRN3_ARATH RecName: Full=5'-3' exoribonuclease 3; AltName: Full=Protein EXORIBONUCLEASE 3 gb\|AAG40732.1\|AF286719_1 XRN3 [Arabidopsis thaliana] gb\|AEE35742.1\| 5'-3' exoribonuclease 3 [Arabidopsis t	-	-	2.0e-19	92%
FL-Next	sp=5'-3' exoribonuclease 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	92%
Sma3	5'->3' exoribonuclease, putative	-	-	1.06e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Exoribonucleases producing 5'-phosphomonoesters.	EC:3.1.13.-	-	1.06e-11	-

Source	Gene names
Sma3	AIN1; At1g54490; At1g75660; At5g42540/At5g42550; EIN5; F10A5.15; F20D21.30; GSVIVT00014087001; GSVIVT00014448001; GSVIVT00031115001; GSVIVT00037275001; K16E1.2; LOC_Os03g58060; LOC_Os11g05840; MICPUCDRAFT_39493; MICPUN_98971; OSJNBa0091C16.23-1; OSJNBb000

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nuclear-transcribed mRNA catabolic process, exonucleolytic	GO:0000291	Biological Process	-
Sma3	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	miRNA catabolic process	GO:0010587	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	deadenylation-independent decapping of nuclear-transcribed mRNA	GO:0031087	Biological Process	-
Sma3	regulation of gene expression, epigenetic	GO:0040029	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G75660.1	XRN3, AtXRN3 5'-3' exoribonuclease 3 chr1:28408289-28414825 FORWARD LENGTH=1020	1.0e-21	92%
RefSeq	Arabidopsis thaliana	NP_565114.1	5'-3' exoribonuclease 3 [Arabidopsis thaliana]	2.0e-21	92%
RefSeq	Populus trichocarpa	XP_002306919.1	predicted protein, partial [Populus trichocarpa]	1.0e-21	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FQ03

Fln msg: Separated hits, possible frame ERROR between 168 and 263, Distance to subject end: 771 aas, your sequence is shorter than subject: 105 - 1020

Fln protein: RRDLGCHSLCLNEISKVILSDANVPGEGEHKVMSYIRLQRNLAGFDQNTRHCLYGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDADLIMLALSTHEVHFS

Protein Length: 106

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTGTTTGAATGAAATTTCGAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAGTCATGTCATACATTCGCCTGCAAAGAAATCTTGCAGGTTTTGATCAAAATACTAGGCATTGCTTATATGGGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGATGCTGATCTAATCATGTTAGCATTGTCTACTCATGAGGTGCACTTCTCTA

Fln Alignment:

GG46A6U01ADT2A___KVILSDANVPGEGEHKVMSYIRLQRNLAGFDQNTRHCLYGLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDADLIMLALSTHEVHFS
Q9FQ03_______________KVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDADLIMLGLATHEVHFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain