SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67337

Length: 286 nt

UniGene Fasta

>sp_v3.0_unigene67337
CGTCGTGACCTTGGCTGTCACTCATGTTCTGTTCAACGAAATCTGTGAGAGAAATGTCATCTCTTGGACGACTATGATAGCGGGATATGTGAAGAATGGGTATTTTGATGAAGCCCTGAATCTCTTTCAAGAAATGCCAGAAAGAAATGTAGTCTCTTGGACTGCGATGATTGCAGGCTGTGCACAGAATGGGTACATTGATGGAGCTCTGGAGCTATTTCAGGACATGCCCAAAAGAAATGTGGTTTCATGGAATGCAATGCTTGCAGGATATGCTACAGAATGG

Ace file of the UniGene sp_v3.0_unigene67337

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S4A9_RICCO	-	-	1.0e-21	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	8.978e-10	-

Source	Gene names
Sma3	57h21.3; At1g09410; At1g56690; At2g35030; At4g02750; F14J9.7; F19I3.26; F25P12.87; GSVIVT00000680001; GSVIVT00007101001; GSVIVT00007171001; GSVIVT00013064001; GSVIVT00016303001; GSVIVT00021552001; GSVIVT00022551001; GSVIVT00023121001; GSVIVT00028482001; G

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein of unknown function DUF1635	IPR012862	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G35030.1	Pentatricopeptide repeat (PPR) superfamily protein chr2:14761080-14762963 REVERSE LENGTH=627	7.0e-29	56%
RefSeq	Arabidopsis thaliana	NP_181048.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	9.0e-29	56%
RefSeq	Populus trichocarpa	XP_002329533.1	predicted protein, partial [Populus trichocarpa]	4.0e-26	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 95 - 644

Fln protein: VVTLAVTHVLFNEICERNVISWTTMIAGYVKNGYFDEALNLFQEMPERNVVSWTAMIAGCAQNGYIDGALELFQDMPKRNVVSWNAMLAGYATEW

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTCTGTTCAACGAAATCTGTGAGAGAAATGTCATCTCTTGGACGACTATGATAGCGGGATATGTGAAGAATGGGTATTTTGATGAAGCCCTGAATCTCTTTCAAGAAATGCCAGAAAGAAATGTAGTCTCTTGGACTGCGATGATTGCAGGCTGTGCACAGAATGGGTACATTGATGGAGCTCTGGAGCTATTTCAGGACATGCCCAAAAGAAATGTGGTTTCATGGAATGCAATGCTTGCAGGATATGCTACAGAATGG

Fln Alignment:

GG46A6U01B0QLX___LFNEICERNVISWTTMIAGYVKNGYFDEALNLFQEMPERNVVSWTAMIAGCAQNGYIDGALELFQDMPKRNVVSWNAMLAGYA
B8LLJ0_______________LFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain