SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67327

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene67327
CGTCGTGACCTTGGCTGTCACTCATGTTTGGGGTGTATTGGGGAGGAGGATGAAGTCCGCGTTCTTCCCAACTGCAGACACTATTTTCACATTTCTTGCATTGATCGGTGGCTTCTTCCATCTACTGTCAATAACTCTTCCTGCCCTTTGTGCAGAGCCACTGTAATAGGCCTCCACACATTACAAGCAAAAATAGGACAAATCGCAACAATACAAGTTCTGGTTGCTCGGAGACG

Ace file of the UniGene sp_v3.0_unigene67327

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL47 [Arabidopsis thaliana] sp\|Q8GW38.1\|ATL47_ARATH RecName: Full=RING-H2 finger protein ATL47 dbj\|BAC43674.1\| unknown protein [Arabidopsis thaliana] gb\|AAQ55274.1\| At1g23980 [Arabidopsis thaliana] gb\|AEE30463.1\| RING-H2 finger pro	-	-	7.0e-10	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G23980.1	RING/U-box superfamily protein chr1:8484879-8485988 REVERSE LENGTH=369	6.0e-14	54%
RefSeq	Arabidopsis thaliana	NP_173809.1	RING-H2 finger protein ATL47 [Arabidopsis thaliana]	7.0e-14	54%
RefSeq	Populus trichocarpa	XP_002319425.1	predicted protein, partial [Populus trichocarpa]	1.0e-13	54%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1W7

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 78 - 198

Fln protein: RRDLGCHSCLGCIGEEDEVRVLPNCRHYFHISCIDRWLLPSTVNNSSCPLCRATVIGLHTLQAKIGQIATIQVLVARR

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTGGGGTGTATTGGGGAGGAGGATGAAGTCCGCGTTCTTCCCAACTGCAGACACTATTTTCACATTTCTTGCATTGATCGGTGGCTTCTTCCATCTACTGTCAATAACTCTTCCTGCCCTTTGTGCAGAGCCACTGTAATAGGCCTCCACACATTACAAGCAAAAATAGGACAAATCGCAACAATACAAGTTCTGGTTGCTCGGAGACG

Fln Alignment:

GG46A6U01CMUGJ___CHSCLGCIGEEDEVRVLPNCRHYFHISCIDRWLLPSTVNNSSCPLCRATVIGLHTLQAK
A9P1W7_______________CAICLGGIGEEDGVRILPNCRHYFHISCIDRWLLPCTVNNSSCPLCRATVIGLHSSQAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain