SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67293

Length: 289 nt

UniGene Fasta

>sp_v3.0_unigene67293
CGTCGTGACCTTGGCTGTCACTCAAGGTGGTAGGAAGGGAGGAGCAAAGAAGAAGGGAGTCTCCAAGTCCACAAAGGCCGGCCTTCAATTCCCTGTTGCAAGAATTGGAAGGTACCTCAAGAAGGGCAGGTATGCCCAAAGAGTCGGTACCGGGGCTCCTGTGTATCTTGCTGCAGTCATGGAGTATCTTGCAGCAGAGGTATGGAATCGCTTTTTTTGTTGTGTTCTTTAACTTTGTTGTGCAGTGTTTGGGTCTGGAATGTTGAATTGTTAGGGGGTTATGTATCAG

Ace file of the UniGene sp_v3.0_unigene67293

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=1 Tax=Sorghum bicolor RepID=C5YYL4_SORBI	-	-	1.0e-13	95%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Histone H2A	-	-	0.0	-

Source	Gene names
Sma3	A34; At1g08880; At1g51060; At1g54690; At3g20670; At4g27230; At5g02560; At5g27670; At5g54640; At5g59870; B1114E07.30; B1377B10.25; CHLREDRAFT_100147; CHLREDRAFT_100223; CHLREDRAFT_107113; CHLREDRAFT_109409; CHLREDRAFT_109464; CHLREDRAFT_110525; CHLREDRAFT_

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	BSD	IPR005607	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G02560.2	HTA12 histone H2A 12 chr5:575437-576456 FORWARD LENGTH=177	1.0e-17	89%
RefSeq	Arabidopsis thaliana	NP_195876.1	histone H2A 12 [Arabidopsis thaliana]	3.0e-18	90%
RefSeq	Populus trichocarpa	XP_002308145.1	histone 2, partial [Populus trichocarpa]	2.0e-18	90%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXR7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 42 aas, atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning, your sequence is shorter than subject: 77 - 142

Fln protein: VVTLAVTQGGRKGGAKKKGVSKSTKAGLQFPVARIGRYLKKGRYAQRVGTGAPVYLAAVMEYLAAEVWNRFFCCVL*

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTGGTAGGAAGGGAGGAGCAAAGAAGAAGGGAGTCTCCAAGTCCACAAAGGCCGGCCTTCAATTCCCTGTTGCAAGAATTGGAAGGTACCTCAAGAAGGGCAGGTATGCCCAAAGAGTCGGTACCGGGGCTCCTGTGTATCTTGCTGCAGTCATGGAGTATCTTGCAGCAGAGGTATGGAATCGCTTTTTTTGTTGTGTTCTTTAACTTTGTTGTGCAGTGTTTGGGTCTGGAATGTTGAATTGTTAGGGGGTTATGTATCAG

Fln Alignment:

GG46A6U01D2O7I___LQFPVARIGRYLKKGRYAQRVGTGAPVYLAAVMEYLAAEV
A9NXR7_______________LQFPVARIGRYLKKGRYSKRVGTGAAVYLAAVMEYLAAEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain