SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67266

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene67266
CGTCGTGACCTTGGCTGTCACTCAATCTGGGTGATGACTGGGTGAAAGAGCACTGCGGCCAGGTCAGACAACTTGCAACGAATTATCAGAGAGCTGCCTGGAACAAGGTATTAGGTTTTCTCAAAGATGCAGGACTGTATCGTAAAGGGGGATTTTCTGGTGGAGTGTCAAAAGGAGCACTGAAAGAGAGATTCAAGAGATTCAATGCTGCATTTGAAGATATTTACAGGACT

Ace file of the UniGene sp_v3.0_unigene67266

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	exocyst subunit exo70-D1 [Arabidopsis thaliana] gb\|AAG52591.1\|AC016529_22 unknown protein; 29470-27569 [Arabidopsis thaliana] gb\|AEE35328.1\| exocyst subunit exo70-D1 [Arabidopsis thaliana]	-	-	4.0e-15	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Putative leucine zipper-containing protein	-	-	2.409e-08	-

Source	Gene names
Sma3	At1g72470; B1144B06.20; GSVIVT00017936001; OJ1344_B01.18; Os08g0455700; Os09g0439600; OsI_29462; OsI_31520; OsJ_27554; OsJ_29514; P0556H01.34; PHYPADRAFT_141382; PHYPADRAFT_184023; POPTRDRAFT_575343; POPTRDRAFT_662149; POPTRDRAFT_785947; POPTRDRAFT_799586

Source	GOs	Term	Type	e value	Identity
Sma3	exocyst	GO:0000145	Cellular Component	0.0	-
Sma3	exocytosis	GO:0006887	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72470.1	ATEXO70D1, EXO70D1 exocyst subunit exo70 family protein D1 chr1:27283759-27285660 FORWARD LENGTH=633	1.0e-19	55%
RefSeq	Arabidopsis thaliana	NP_177391.1	exocyst subunit exo70-D1 [Arabidopsis thaliana]	1.0e-19	55%
RefSeq	Populus trichocarpa	XP_002322248.1	predicted protein [Populus trichocarpa]	1.0e-20	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQZ8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 75 aas, your sequence is shorter than subject: 77 - 346

Fln protein: S*PWLSLNLGDDWVKEHCGQVRQLATNYQRAAWNKVLGFLKDAGLYRKGGFSGGVSKGALKERFKRFNAAFEDIYRT

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTGGGTGATGACTGGGTGAAAGAGCACTGCGGCCAGGTCAGACAACTTGCAACGAATTATCAGAGAGCTGCCTGGAACAAGGTATTAGGTTTTCTCAAAGATGCAGGACTGTATCGTAAAGGGGGATTTTCTGGTGGAGTGTCAAAAGGAGCACTGAAAGAGAGATTCAAGAGATTCAATGCTGCATTTGAAGATATTTACAGGACT

Fln Alignment:

GG46A6U01CFNFT___LGDDWVKEHCGQVRQLATNYQRAAWNKVLGFLKDAGLYRKGGFSGGVSKGALKERFKRFNAAFEDIYRT
B8LQZ8_______________LGDVWVRQHSSNVRRYHKSYQRVAWGKVLSCLRDEGIHVGGNFSSGVSKPVLKERFKNFNALFEELQKT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain