SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67168

Length: 341 nt

UniGene Fasta

>sp_v3.0_unigene67168
CGTCGTGACCTTGGCTGTCACTCACCACTGGAAGTCCACTCACTCAGATTCTCCAAGTGGTTGTAGCATCTTGGAGGAATAGAAAGCTTAAATTGCCTGCAGATGTGGGACAATTGTATGATGGTAATAAGGCCTCTCTGTCCCACAACAGGGCACCCCATACAGATCAATTCCGGTGCCTGGACATAGCTTCTATAATAGACTCATCGATGGAAGAGTCTTCCAATCCCAGCAGATGGAGGCTCTGCACACTAAGTAAAGTAGAAGAGGTGAAGATAATAATAAGAATGCTGCCCATCTGGGCAACCACAATAATGTTCTGGACCATCTATGCTCAGATG

Ace file of the UniGene sp_v3.0_unigene67168

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative nitrate transporter [Oryza sativa Japonica Group] gb\|EAZ05635.1\| hypothetical protein OsI_27853 [Oryza sativa Indica Group]	-	-	6.0e-25	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Peptide transporter 1	-	-	2.375e-14	-

Source	Gene names
Sma3	At1g12110; At2g02040; CHL1; F14H20.11; GSVIVT00009628001; GSVIVT00016880001; LOC_Os03g01290; LOC_Os10g40600; NRT1.1; NTR1; NtNRT1.1-s; NtNRT1.1-t; NtNRT1.2-s; NtNRT1.2-t; OJ1177_E11.8; OSJNBb0014I11.9; OSJNBb0039M16.33; OSJNBb0040H10.6; OSJNba0093F12.10;

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to herbicide	GO:0009635	Biological Process	-
Sma3	response to nitrate	GO:0010167	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	nitrate transport	GO:0015706	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12110.1	NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 nitrate transporter 1.1 chr1:4105341-4109290 FORWARD LENGTH=590	2.0e-30	52%
RefSeq	Arabidopsis thaliana	NP_563899.1	nitrate transporter 1.1 [Arabidopsis thaliana]	3.0e-30	52%
RefSeq	Populus trichocarpa	XP_002303512.1	predicted protein [Populus trichocarpa]	9.0e-28	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 219 aas, your sequence is shorter than subject: 113 - 594

Fln protein: S*PWLSLTTGSPLTQILQVVVASWRNRKLKLPADVGQLYDGNKASLSHNRAPHTDQFRCLDIASIIDSSMEESSNPSRWRLCTLSKVEEVKIIIRMLPIWATTIMFWTIYAQM

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCACTGGAAGTCCACTCACTCAGATTCTCCAAGTGGTTGTAGCATCTTGGAGGAATAGAAAGCTTAAATTGCCTGCAGATGTGGGACAATTGTATGATGGTAATAAGGCCTCTCTGTCCCACAACAGGGCACCCCATACAGATCAATTCCGGTGCCTGGACATAGCTTCTATAATAGACTCATCGATGGAAGAGTCTTCCAATCCCAGCAGATGGAGGCTCTGCACACTAAGTAAAGTAGAAGAGGTGAAGATAATAATAAGAATGCTGCCCATCTGGGCAACCACAATAATGTTCTGGACCATCTATGCTCAGATG

Fln Alignment:

GG46A6U01AI8P8___GSPLTQILQVVVASWRNRKLKLPADVGQLY---DGNKASLSHNRAPHTDQFRCLDIASII-DSSMEESSNPSRWRLCTLSKVEEVKIIIRMLPIWATTIMFWTIYAQM
A9NVR2_______________GSPVTRMCQVVVASLRKLRKTVPLDHSHLYEVQDRNSAIQGSRKLEHTDEFKCLDKSAIITDDDVRKGGFSNPWRLCTVTQVEEMKILLRMFPIWATGIVFAAVYSQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain