SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67160

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene67160
CGTCGTGACCTTGGCTGTCACTCAATTTTGAAAATGTGGGTGGTGAGATGCTTGAAGCAGTTCTTGAAAATATGAATCTCCATGGTCGTATTGCTGCTTGTGGGATGATCTCAGAATATAATCGGGAGGAAAGCCGAGGCATAAGAAACATAAGTCGTGTGATAAGCAAGCGCATAACTATACAAGGTTTCATCATATATGATTATTGGGA

Ace file of the UniGene sp_v3.0_unigene67160

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Quinone oxidoreductase-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9LFK4_ARATH	-	-	3.0e-17	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Quinone oxidoreductase-like protein	-	-	5.087e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	5.672e-06	-

Source	Gene names
Sma3	At3g03080; At5g16970; At5g16980; At5g16980/F2K13_130; At5g16990; At5g17000; F2K13_120; F2K13_130; F2K13_140; F2K13_150; GSVIVT00034730001; GSVIVT00034734001; P1; P2; POPTRDRAFT_718143; POPTRDRAFT_718146; RCOM_0605880; T17B22.23; VITISV_043825;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G16980.2	-	2.0e-23	60%
RefSeq	Arabidopsis thaliana	NP_197200.2	2-alkenal reductase [Arabidopsis thaliana]	1.0e-23	60%
RefSeq	Populus trichocarpa	XP_002309720.1	predicted protein [Populus trichocarpa]	2.0e-22	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0J2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 54 aas, your sequence is shorter than subject: 69 - 344

Fln protein: S*PWLSLNFENVGGEMLEAVLENMNLHGRIAACGMISEYNREESRGIRNISRVISKRITIQGFIIYDYW

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGAAAATGTGGGTGGTGAGATGCTTGAAGCAGTTCTTGAAAATATGAATCTCCATGGTCGTATTGCTGCTTGTGGGATGATCTCAGAATATAATCGGGAGGAAAGCCGAGGCATAAGAAACATAAGTCGTGTGATAAGCAAGCGCATAACTATACAAGGTTTCATCATATATGATTATTGGGA

Fln Alignment:

GG46A6U01BYU9U___LSLNFENVGGEMLEAVLENMNLHGRIAACGMISEYNREESRGIRNISRVISKRITIQGFIIYDYW
A9P0J2_______________IDIYFENVGSKMLEAVLENMNLHGRIAACGMISEYNLEEGQGIRNISRVISKRIKIQGFIIHDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain